RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 KRTAP4-3Q9BYR4 195 aa5.45□□□□□ -1.54
SFSWAP-203ENST00000535236 KMT2CQ8NEZ4 4911 aaKnown RBP5.39□□□□□ -1.55
SFSWAP-203ENST00000535236 PKHD1P08F94 4074 aa5.38□□□□□ -1.55
SFSWAP-203ENST00000535236 KRTAP9-6A0A140TA67 174 aa5.34□□□□□ -1.56
SFSWAP-203ENST00000535236 HYDINQ4G0P3 5121 aa5.31□□□□□ -1.56
SFSWAP-203ENST00000535236 MUC17Q685J3 4493 aa5.31□□□□□ -1.56
SFSWAP-203ENST00000535236 FLGP20930 4061 aaPredicted RBP5.3□□□□□ -1.56
SFSWAP-203ENST00000535236 MT1AP04731 61 aa5.3□□□□□ -1.56
SFSWAP-203ENST00000535236 KRTAP20-1Q3LI63 56 aa5.23□□□□□ -1.57
SFSWAP-203ENST00000535236 LCE5AQ5TCM9 118 aa5.23□□□□□ -1.57
SFSWAP-203ENST00000535236 ABCA13Q86UQ4 5058 aa5.22□□□□□ -1.57
SFSWAP-203ENST00000535236 KRTAP19-7Q3SYF9 63 aa5.21□□□□□ -1.58
SFSWAP-203ENST00000535236 TNXBP22105 4242 aa5.2□□□□□ -1.58
SFSWAP-203ENST00000535236 LCE2AQ5TA79 106 aaPredicted RBP5.18□□□□□ -1.58
SFSWAP-203ENST00000535236 SYNE1Q8NF91 8797 aaKnown RBP5.18□□□□□ -1.58
SFSWAP-203ENST00000535236 KRTAP2-3P0C7H8 128 aa5.15□□□□□ -1.59
SFSWAP-203ENST00000535236 KRTAP2-4Q9BYR9 128 aa5.15□□□□□ -1.59
SFSWAP-203ENST00000535236 KRTAP2-1Q9BYU5 128 aa5.15□□□□□ -1.59
SFSWAP-203ENST00000535236 KRTAP4-9Q9BYQ8 210 aa5.12□□□□□ -1.59
SFSWAP-203ENST00000535236 KRTAP9-7A8MTY7 169 aa5.06□□□□□ -1.6
SFSWAP-203ENST00000535236 RNF213Q63HN8 5207 aa5.04□□□□□ -1.6
SFSWAP-203ENST00000535236 LCE1AQ5T7P2 110 aa5.02□□□□□ -1.61
SFSWAP-203ENST00000535236 KRTAP6-3Q3LI67 103 aa5□□□□□ -1.61
SFSWAP-203ENST00000535236 FAT4Q6V0I7 4981 aa4.98□□□□□ -1.61
SFSWAP-203ENST00000535236 SYNE2Q8WXH0 6885 aaKnown RBP4.96□□□□□ -1.62
SFSWAP-203ENST00000535236 FSIP2Q5CZC0 6907 aa4.95□□□□□ -1.62
SFSWAP-203ENST00000535236 UBR4Q5T4S7 5183 aa4.93□□□□□ -1.62
SFSWAP-203ENST00000535236 KRTAP6-2Q3LI66 62 aa4.92□□□□□ -1.62
SFSWAP-203ENST00000535236 KRTAP6-1Q3LI64 71 aa4.9□□□□□ -1.62
SFSWAP-203ENST00000535236 LCE4AQ5TA78 99 aa4.9□□□□□ -1.63
SFSWAP-203ENST00000535236 KRTAP9-4Q9BYQ2 154 aa4.88□□□□□ -1.63
SFSWAP-203ENST00000535236 HMCN2Q8NDA2 5059 aa4.88□□□□□ -1.63
SFSWAP-203ENST00000535236 MUC2Q02817 5179 aa4.87□□□□□ -1.63
SFSWAP-203ENST00000535236 LCE1CQ5T751 118 aa4.82□□□□□ -1.64
SFSWAP-203ENST00000535236 LCE1EQ5T753 118 aa4.82□□□□□ -1.64
SFSWAP-203ENST00000535236 LCE1FQ5T754 118 aa4.82□□□□□ -1.64
SFSWAP-203ENST00000535236 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.8□□□□□ -1.64
SFSWAP-203ENST00000535236 KRTAP2-2Q9BYT5 123 aa4.8□□□□□ -1.64
SFSWAP-203ENST00000535236 OBSCNQ5VST9 7968 aa4.77□□□□□ -1.65
SFSWAP-203ENST00000535236 KRTAP9-6A8MVA2 160 aa4.67□□□□□ -1.66
SFSWAP-203ENST00000535236 KRTAP9-9Q9BYP9 154 aa4.4□□□□□ -1.7
SFSWAP-203ENST00000535236 USH2AO75445 5202 aa4.28□□□□□ -1.72
SFSWAP-203ENST00000535236 FCGBPQ9Y6R7 5405 aaPredicted RBP4.15□□□□□ -1.74
SFSWAP-203ENST00000535236 DSTQ03001 7570 aaKnown RBP4.13□□□□□ -1.75
SFSWAP-203ENST00000535236 NEBP20929 6669 aa4.13□□□□□ -1.75
SFSWAP-203ENST00000535236 MACF1Q9UPN3 7388 aaKnown RBP4.07□□□□□ -1.76
SFSWAP-203ENST00000535236 KRTAP5-9P26371 169 aa4.05□□□□□ -1.76
SFSWAP-203ENST00000535236 KRTAP4-11Q9BYQ6 195 aa4.05□□□□□ -1.76
SFSWAP-203ENST00000535236 KRTAP4-6Q9BYQ5 205 aa4.04□□□□□ -1.76
SFSWAP-203ENST00000535236 KRTAP20-2Q3LI61 65 aa4□□□□□ -1.77
SFSWAP-203ENST00000535236 KMT2DO14686 5537 aa3.9□□□□□ -1.78
SFSWAP-203ENST00000535236 SSPOA2VEC9 5147 aa3.84□□□□□ -1.79
SFSWAP-203ENST00000535236 MUC19Q7Z5P9 8384 aa3.82□□□□□ -1.8
SFSWAP-203ENST00000535236 KRTAP4-4Q9BYR3 166 aa3.8□□□□□ -1.8
SFSWAP-203ENST00000535236 KRTAP4-12Q9BQ66 201 aa3.77□□□□□ -1.81
SFSWAP-203ENST00000535236 KRTAP4-2Q9BYR5 136 aa3.77□□□□□ -1.81
SFSWAP-203ENST00000535236 GPR98Q8WXG9 6306 aa3.75□□□□□ -1.81
SFSWAP-203ENST00000535236 MDN1Q9NU22 5596 aa3.7□□□□□ -1.82
SFSWAP-203ENST00000535236 KRTAP5-4Q6L8H1 288 aa3.7□□□□□ -1.82
SFSWAP-203ENST00000535236 MUC12Q9UKN1 5478 aa3.69□□□□□ -1.82
SFSWAP-203ENST00000535236 KRTAP5-5Q701N2 237 aaPredicted RBP3.43□□□□□ -1.86
SFSWAP-203ENST00000535236 KRTAP5-3Q6L8H2 238 aa3.23□□□□□ -1.89
SFSWAP-203ENST00000535236 MUC5ACP98088 5654 aa3.15□□□□□ -1.9
SFSWAP-203ENST00000535236 AHNAK2Q8IVF2 5795 aa3.07□□□□□ -1.92
SFSWAP-203ENST00000535236 HMCN1Q96RW7 5635 aa2.98□□□□□ -1.93
SFSWAP-203ENST00000535236 KRTAP5-8O75690 187 aa2.96□□□□□ -1.93
SFSWAP-203ENST00000535236 PHGR1C9JFL3 82 aa2.88□□□□□ -1.95
SFSWAP-203ENST00000535236 KRTAP5-10Q6L8G5 202 aa2.8□□□□□ -1.96
SFSWAP-203ENST00000535236 MUC5BQ9HC84 5762 aaPredicted RBP2.7□□□□□ -1.98
SFSWAP-203ENST00000535236 KRTAP5-2Q701N4 177 aa2.68□□□□□ -1.98
SFSWAP-203ENST00000535236 AHNAKQ09666 5890 aaKnown RBP2.56□□□□□ -2
SFSWAP-203ENST00000535236 KRTAP5-11Q6L8G4 156 aa2.55□□□□□ -2
SFSWAP-203ENST00000535236 KRTAP5-1Q6L8H4 278 aa2.52□□□□□ -2.01
SFSWAP-203ENST00000535236 KRTAP21-2Q3LI59 83 aa2.34□□□□□ -2.03
SFSWAP-203ENST00000535236 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
SFSWAP-203ENST00000535236 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.11□□□□□ -2.07
SFSWAP-203ENST00000535236 KRTAP5-7Q6L8G8 165 aa1.98□□□□□ -2.09
SFSWAP-203ENST00000535236 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 10.8 ms