RNA–Protein interactions for RNA: ENST00000534532.6

NCAPD3-213, Transcript of non-SMC condensin II complex subunit D3, human

TSL 2

Gene NCAPD3, Length 5,539 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCAPD3-213	ENST00000534532	MT3	P25713	68 aa		4.99	□□□□□ -1.61
NCAPD3-213	ENST00000534532	LPA	P08519	4548 aa		4.98	□□□□□ -1.61
NCAPD3-213	ENST00000534532	MUC17	Q685J3	4493 aa		4.95	□□□□□ -1.62
NCAPD3-213	ENST00000534532	UBR4	Q5T4S7	5183 aa		4.93	□□□□□ -1.62
NCAPD3-213	ENST00000534532	FLG	P20930	4061 aa	Predicted RBP	4.9	□□□□□ -1.62
NCAPD3-213	ENST00000534532	SYNE1	Q8NF91	8797 aa	Known RBP	4.88	□□□□□ -1.63
NCAPD3-213	ENST00000534532	RNF213	Q63HN8	5207 aa		4.85	□□□□□ -1.63
NCAPD3-213	ENST00000534532	KRTAP20-1	Q3LI63	56 aa		4.81	□□□□□ -1.64
NCAPD3-213	ENST00000534532	FAT4	Q6V0I7	4981 aa		4.8	□□□□□ -1.64
NCAPD3-213	ENST00000534532	FSIP2	Q5CZC0	6907 aa		4.79	□□□□□ -1.64
NCAPD3-213	ENST00000534532	KRTAP9-7	A8MTY7	169 aa		4.79	□□□□□ -1.64
NCAPD3-213	ENST00000534532	TNXB	P22105	4242 aa		4.78	□□□□□ -1.64
NCAPD3-213	ENST00000534532	KRTAP4-3	Q9BYR4	195 aa		4.75	□□□□□ -1.65
NCAPD3-213	ENST00000534532	LCE1B	Q5T7P3	118 aa		4.74	□□□□□ -1.65
NCAPD3-213	ENST00000534532	LOC100996750	A0A140TA64	210 aa		4.73	□□□□□ -1.65
NCAPD3-213	ENST00000534532	LCE1D	Q5T752	114 aa		4.73	□□□□□ -1.65
NCAPD3-213	ENST00000534532	KRTAP6-3	Q3LI67	103 aa		4.71	□□□□□ -1.66
NCAPD3-213	ENST00000534532	KRTAP19-7	Q3SYF9	63 aa		4.69	□□□□□ -1.66
NCAPD3-213	ENST00000534532	MT1A	P04731	61 aa		4.68	□□□□□ -1.66
NCAPD3-213	ENST00000534532	LCE1A	Q5T7P2	110 aa		4.67	□□□□□ -1.66
NCAPD3-213	ENST00000534532	SYNE2	Q8WXH0	6885 aa	Known RBP	4.66	□□□□□ -1.66
NCAPD3-213	ENST00000534532	KRTAP2-3	P0C7H8	128 aa		4.63	□□□□□ -1.67
NCAPD3-213	ENST00000534532	KRTAP2-4	Q9BYR9	128 aa		4.63	□□□□□ -1.67
NCAPD3-213	ENST00000534532	MUC2	Q02817	5179 aa		4.62	□□□□□ -1.67
NCAPD3-213	ENST00000534532	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.57	□□□□□ -1.68
NCAPD3-213	ENST00000534532	HMCN2	Q8NDA2	5059 aa		4.55	□□□□□ -1.68
NCAPD3-213	ENST00000534532	PRM1	P04553	51 aa		4.52	□□□□□ -1.69
NCAPD3-213	ENST00000534532	LCE5A	Q5TCM9	118 aa		4.49	□□□□□ -1.69
NCAPD3-213	ENST00000534532	KRTAP2-2	Q9BYT5	123 aa		4.47	□□□□□ -1.69
NCAPD3-213	ENST00000534532	KRTAP2-1	Q9BYU5	128 aa		4.47	□□□□□ -1.69
NCAPD3-213	ENST00000534532	LCE4A	Q5TA78	99 aa		4.47	□□□□□ -1.69
NCAPD3-213	ENST00000534532	OBSCN	Q5VST9	7968 aa		4.38	□□□□□ -1.71
NCAPD3-213	ENST00000534532	KRTAP4-9	Q9BYQ8	210 aa		4.35	□□□□□ -1.71
NCAPD3-213	ENST00000534532	KRTAP6-2	Q3LI66	62 aa		4.3	□□□□□ -1.72
NCAPD3-213	ENST00000534532	KRTAP9-4	Q9BYQ2	154 aa		4.3	□□□□□ -1.72
NCAPD3-213	ENST00000534532	KRTAP6-1	Q3LI64	71 aa		4.29	□□□□□ -1.72
NCAPD3-213	ENST00000534532	LCE1C	Q5T751	118 aa		4.09	□□□□□ -1.75
NCAPD3-213	ENST00000534532	LCE1E	Q5T753	118 aa		4.09	□□□□□ -1.75
NCAPD3-213	ENST00000534532	LCE1F	Q5T754	118 aa		4.09	□□□□□ -1.75
NCAPD3-213	ENST00000534532	KRTAP9-6	A8MVA2	160 aa		4.08	□□□□□ -1.76
NCAPD3-213	ENST00000534532	USH2A	O75445	5202 aa		4.05	□□□□□ -1.76
NCAPD3-213	ENST00000534532	MACF1	Q9UPN3	7388 aa	Known RBP	3.98	□□□□□ -1.77
NCAPD3-213	ENST00000534532	NEB	P20929	6669 aa		3.95	□□□□□ -1.78
NCAPD3-213	ENST00000534532	DST	Q03001	7570 aa	Known RBP	3.95	□□□□□ -1.78
NCAPD3-213	ENST00000534532	KRTAP9-9	Q9BYP9	154 aa		3.94	□□□□□ -1.78
NCAPD3-213	ENST00000534532	KRTAP5-9	P26371	169 aa		3.91	□□□□□ -1.78
NCAPD3-213	ENST00000534532	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.9	□□□□□ -1.79
NCAPD3-213	ENST00000534532	KMT2D	O14686	5537 aa		3.85	□□□□□ -1.79
NCAPD3-213	ENST00000534532	GPR98	Q8WXG9	6306 aa		3.79	□□□□□ -1.8
NCAPD3-213	ENST00000534532	SSPO	A2VEC9	5147 aa		3.77	□□□□□ -1.81
NCAPD3-213	ENST00000534532	MDN1	Q9NU22	5596 aa		3.69	□□□□□ -1.82
NCAPD3-213	ENST00000534532	KRTAP4-6	Q9BYQ5	205 aa		3.68	□□□□□ -1.82
NCAPD3-213	ENST00000534532	KRTAP20-2	Q3LI61	65 aa		3.67	□□□□□ -1.82
NCAPD3-213	ENST00000534532	MUC19	Q7Z5P9	8384 aa		3.51	□□□□□ -1.85
NCAPD3-213	ENST00000534532	MUC12	Q9UKN1	5478 aa		3.45	□□□□□ -1.86
NCAPD3-213	ENST00000534532	KRTAP5-4	Q6L8H1	288 aa		3.44	□□□□□ -1.86
NCAPD3-213	ENST00000534532	KRTAP4-11	Q9BYQ6	195 aa		3.35	□□□□□ -1.87
NCAPD3-213	ENST00000534532	KRTAP4-12	Q9BQ66	201 aa		3.27	□□□□□ -1.89
NCAPD3-213	ENST00000534532	KRTAP4-2	Q9BYR5	136 aa		3.27	□□□□□ -1.89
NCAPD3-213	ENST00000534532	KRTAP4-4	Q9BYR3	166 aa		3.21	□□□□□ -1.9
NCAPD3-213	ENST00000534532	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.1	□□□□□ -1.91
NCAPD3-213	ENST00000534532	KRTAP5-3	Q6L8H2	238 aa		3.09	□□□□□ -1.92
NCAPD3-213	ENST00000534532	AHNAK2	Q8IVF2	5795 aa		3.06	□□□□□ -1.92
NCAPD3-213	ENST00000534532	MUC5AC	P98088	5654 aa		2.98	□□□□□ -1.93
NCAPD3-213	ENST00000534532	HMCN1	Q96RW7	5635 aa		2.89	□□□□□ -1.95
NCAPD3-213	ENST00000534532	KRTAP5-8	O75690	187 aa		2.79	□□□□□ -1.96
NCAPD3-213	ENST00000534532	KRTAP5-2	Q701N4	177 aa		2.6	□□□□□ -1.99
NCAPD3-213	ENST00000534532	PHGR1	C9JFL3	82 aa		2.58	□□□□□ -2
NCAPD3-213	ENST00000534532	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.5	□□□□□ -2.01
NCAPD3-213	ENST00000534532	AHNAK	Q09666	5890 aa	Known RBP	2.5	□□□□□ -2.01
NCAPD3-213	ENST00000534532	KRTAP5-10	Q6L8G5	202 aa		2.47	□□□□□ -2.01
NCAPD3-213	ENST00000534532	KRTAP5-11	Q6L8G4	156 aa		2.39	□□□□□ -2.03
NCAPD3-213	ENST00000534532	KRTAP5-1	Q6L8H4	278 aa		2.29	□□□□□ -2.04
NCAPD3-213	ENST00000534532	KRTAP21-2	Q3LI59	83 aa		2.15	□□□□□ -2.07
NCAPD3-213	ENST00000534532	KRTAP5-7	Q6L8G8	165 aa		2.12	□□□□□ -2.07
NCAPD3-213	ENST00000534532	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.05	□□□□□ -2.08
NCAPD3-213	ENST00000534532	KRTAP21-1	Q3LI58	79 aa		1.86	□□□□□ -2.11
NCAPD3-213	ENST00000534532	MUC16	Q8WXI7	14507 aa		1.47	□□□□□ -2.17

Retrieved 78 of 20,778 RNA–protein pairs in 61.7 ms