RNA–Protein interactions for RNA: ENST00000532566.3

PCDHA3-202, Transcript of protocadherin alpha 3, humanhuman

BASIC

Gene PCDHA3, Length 4,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-202ENST00000532566 KRTAP12-4P60329 112 aa5.02□□□□□ -1.61
PCDHA3-202ENST00000532566 KRTAP19-6Q3LI70 58 aa5.02□□□□□ -1.61
PCDHA3-202ENST00000532566 SPRR2DP22532 72 aa4.96□□□□□ -1.62
PCDHA3-202ENST00000532566 KRTAP19-7Q3SYF9 63 aa4.92□□□□□ -1.62
PCDHA3-202ENST00000532566 MT1MQ8N339 61 aa4.9□□□□□ -1.62
PCDHA3-202ENST00000532566 KRTAP9-2Q9BYQ4 174 aa4.88□□□□□ -1.63
PCDHA3-202ENST00000532566 LCE3DQ9BYE3 92 aa4.84□□□□□ -1.63
PCDHA3-202ENST00000532566 OBSCNQ5VST9 7968 aa4.82□□□□□ -1.64
PCDHA3-202ENST00000532566 KRTAP4-3Q9BYR4 195 aa4.78□□□□□ -1.64
PCDHA3-202ENST00000532566 LCE3EQ5T5B0 92 aa4.77□□□□□ -1.65
PCDHA3-202ENST00000532566 LOC100996750A0A140TA64 210 aa4.76□□□□□ -1.65
PCDHA3-202ENST00000532566 LCE2DQ5TA82 110 aaPredicted RBP4.75□□□□□ -1.65
PCDHA3-202ENST00000532566 SYNE2Q8WXH0 6885 aaKnown RBP4.65□□□□□ -1.67
PCDHA3-202ENST00000532566 KRTAP9-6A0A140TA67 174 aa4.63□□□□□ -1.67
PCDHA3-202ENST00000532566 KRTAP2-3P0C7H8 128 aa4.62□□□□□ -1.67
PCDHA3-202ENST00000532566 KRTAP2-4Q9BYR9 128 aa4.62□□□□□ -1.67
PCDHA3-202ENST00000532566 KRTAP2-1Q9BYU5 128 aa4.62□□□□□ -1.67
PCDHA3-202ENST00000532566 KRTAP9-6A8MVA2 160 aa4.58□□□□□ -1.68
PCDHA3-202ENST00000532566 MT3P25713 68 aa4.55□□□□□ -1.68
PCDHA3-202ENST00000532566 DSTQ03001 7570 aaKnown RBP4.53□□□□□ -1.68
PCDHA3-202ENST00000532566 MT1AP04731 61 aa4.52□□□□□ -1.69
PCDHA3-202ENST00000532566 USH2AO75445 5202 aa4.51□□□□□ -1.69
PCDHA3-202ENST00000532566 MACF1Q9UPN3 7388 aaKnown RBP4.51□□□□□ -1.69
PCDHA3-202ENST00000532566 MT4P47944 62 aa4.44□□□□□ -1.7
PCDHA3-202ENST00000532566 LCE5AQ5TCM9 118 aa4.43□□□□□ -1.7
PCDHA3-202ENST00000532566 FCGBPQ9Y6R7 5405 aaPredicted RBP4.4□□□□□ -1.71
PCDHA3-202ENST00000532566 KRTAP9-7A8MTY7 169 aa4.39□□□□□ -1.71
PCDHA3-202ENST00000532566 KRTAP4-9Q9BYQ8 210 aa4.38□□□□□ -1.71
PCDHA3-202ENST00000532566 KMT2DO14686 5537 aa4.38□□□□□ -1.71
PCDHA3-202ENST00000532566 LCE1AQ5T7P2 110 aa4.37□□□□□ -1.71
PCDHA3-202ENST00000532566 PRM1P04553 51 aa4.37□□□□□ -1.71
PCDHA3-202ENST00000532566 KRTAP6-1Q3LI64 71 aa4.31□□□□□ -1.72
PCDHA3-202ENST00000532566 KRTAP6-3Q3LI67 103 aa4.24□□□□□ -1.73
PCDHA3-202ENST00000532566 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.2□□□□□ -1.74
PCDHA3-202ENST00000532566 KRTAP20-1Q3LI63 56 aa4.19□□□□□ -1.74
PCDHA3-202ENST00000532566 LCE1DQ5T752 114 aa4.16□□□□□ -1.74
PCDHA3-202ENST00000532566 KRTAP9-4Q9BYQ2 154 aa4.15□□□□□ -1.75
PCDHA3-202ENST00000532566 KRTAP6-2Q3LI66 62 aa4.13□□□□□ -1.75
PCDHA3-202ENST00000532566 SSPOA2VEC9 5147 aa4.13□□□□□ -1.75
PCDHA3-202ENST00000532566 LCE1BQ5T7P3 118 aa4.12□□□□□ -1.75
PCDHA3-202ENST00000532566 MUC12Q9UKN1 5478 aa4.11□□□□□ -1.75
PCDHA3-202ENST00000532566 MDN1Q9NU22 5596 aa4.05□□□□□ -1.76
PCDHA3-202ENST00000532566 LCE4AQ5TA78 99 aa3.98□□□□□ -1.77
PCDHA3-202ENST00000532566 KRTAP5-9P26371 169 aa3.94□□□□□ -1.78
PCDHA3-202ENST00000532566 GPR98Q8WXG9 6306 aa3.93□□□□□ -1.78
PCDHA3-202ENST00000532566 KRTAP2-2Q9BYT5 123 aa3.92□□□□□ -1.78
PCDHA3-202ENST00000532566 NEBP20929 6669 aa3.82□□□□□ -1.8
PCDHA3-202ENST00000532566 MUC19Q7Z5P9 8384 aa3.75□□□□□ -1.81
PCDHA3-202ENST00000532566 KRTAP4-6Q9BYQ5 205 aa3.59□□□□□ -1.84
PCDHA3-202ENST00000532566 KRTAP20-2Q3LI61 65 aa3.54□□□□□ -1.84
PCDHA3-202ENST00000532566 KRTAP5-5Q701N2 237 aaPredicted RBP3.48□□□□□ -1.85
PCDHA3-202ENST00000532566 LCE1CQ5T751 118 aa3.46□□□□□ -1.86
PCDHA3-202ENST00000532566 LCE1EQ5T753 118 aa3.46□□□□□ -1.86
PCDHA3-202ENST00000532566 LCE1FQ5T754 118 aa3.46□□□□□ -1.86
PCDHA3-202ENST00000532566 KRTAP9-9Q9BYP9 154 aa3.34□□□□□ -1.87
PCDHA3-202ENST00000532566 KRTAP5-4Q6L8H1 288 aa3.28□□□□□ -1.88
PCDHA3-202ENST00000532566 KRTAP4-11Q9BYQ6 195 aa3.25□□□□□ -1.89
PCDHA3-202ENST00000532566 MUC5ACP98088 5654 aa3.16□□□□□ -1.9
PCDHA3-202ENST00000532566 HMCN1Q96RW7 5635 aa3.12□□□□□ -1.91
PCDHA3-202ENST00000532566 AHNAK2Q8IVF2 5795 aa3.01□□□□□ -1.93
PCDHA3-202ENST00000532566 KRTAP4-12Q9BQ66 201 aa2.98□□□□□ -1.93
PCDHA3-202ENST00000532566 KRTAP4-2Q9BYR5 136 aa2.98□□□□□ -1.93
PCDHA3-202ENST00000532566 KRTAP4-4Q9BYR3 166 aa2.97□□□□□ -1.93
PCDHA3-202ENST00000532566 KRTAP5-3Q6L8H2 238 aa2.87□□□□□ -1.95
PCDHA3-202ENST00000532566 KRTAP5-2Q701N4 177 aa2.87□□□□□ -1.95
PCDHA3-202ENST00000532566 KRTAP5-10Q6L8G5 202 aa2.72□□□□□ -1.97
PCDHA3-202ENST00000532566 KRTAP5-8O75690 187 aa2.64□□□□□ -1.99
PCDHA3-202ENST00000532566 AHNAKQ09666 5890 aaKnown RBP2.54□□□□□ -2
PCDHA3-202ENST00000532566 KRTAP5-1Q6L8H4 278 aa2.49□□□□□ -2.01
PCDHA3-202ENST00000532566 MUC5BQ9HC84 5762 aaPredicted RBP2.43□□□□□ -2.02
PCDHA3-202ENST00000532566 KRTAP5-11Q6L8G4 156 aa2.43□□□□□ -2.02
PCDHA3-202ENST00000532566 KRTAP21-2Q3LI59 83 aa2.39□□□□□ -2.03
PCDHA3-202ENST00000532566 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.3□□□□□ -2.04
PCDHA3-202ENST00000532566 PHGR1C9JFL3 82 aa2.27□□□□□ -2.05
PCDHA3-202ENST00000532566 KRTAP5-7Q6L8G8 165 aa2.27□□□□□ -2.05
PCDHA3-202ENST00000532566 KRTAP21-1Q3LI58 79 aa2.08□□□□□ -2.08
PCDHA3-202ENST00000532566 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 114.2 ms