RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 LCE1AQ5T7P2 110 aa5.81□□□□□ -1.48
CPSF1-208ENST00000532560 KRTAP23-1A1A580 65 aa5.77□□□□□ -1.49
CPSF1-208ENST00000532560 KRTAP15-1Q3LI76 137 aa5.76□□□□□ -1.49
CPSF1-208ENST00000532560 TNP1P09430 55 aa5.7□□□□□ -1.5
CPSF1-208ENST00000532560 KRTAP2-2Q9BYT5 123 aa5.69□□□□□ -1.5
CPSF1-208ENST00000532560 KRTAP2-1Q9BYU5 128 aa5.69□□□□□ -1.5
CPSF1-208ENST00000532560 SPRR2DP22532 72 aa5.66□□□□□ -1.5
CPSF1-208ENST00000532560 KRTAP19-7Q3SYF9 63 aa5.65□□□□□ -1.5
CPSF1-208ENST00000532560 MT1EP04732 61 aa5.6□□□□□ -1.51
CPSF1-208ENST00000532560 H3BS24 57 aa5.56□□□□□ -1.52
CPSF1-208ENST00000532560 KRTAP19-5Q3LI72 72 aa5.54□□□□□ -1.52
CPSF1-208ENST00000532560 KRTAP19-3Q7Z4W3 81 aa5.52□□□□□ -1.53
CPSF1-208ENST00000532560 GPR98Q8WXG9 6306 aa5.52□□□□□ -1.53
CPSF1-208ENST00000532560 LCE5AQ5TCM9 118 aa5.51□□□□□ -1.53
CPSF1-208ENST00000532560 LCE3AQ5TA76 89 aa5.5□□□□□ -1.53
CPSF1-208ENST00000532560 LCE3BQ5TA77 95 aa5.49□□□□□ -1.53
CPSF1-208ENST00000532560 NDUFAF8A1L188 74 aa5.48□□□□□ -1.53
CPSF1-208ENST00000532560 LUZP6Q538Z0 58 aa5.4□□□□□ -1.54
CPSF1-208ENST00000532560 MT1GP13640 62 aa5.39□□□□□ -1.55
CPSF1-208ENST00000532560 MT1LQ93083 61 aa5.38□□□□□ -1.55
CPSF1-208ENST00000532560 SPRR5A0A1B0GTR4 108 aa5.32□□□□□ -1.56
CPSF1-208ENST00000532560 MT1MQ8N339 61 aa5.31□□□□□ -1.56
CPSF1-208ENST00000532560 DSTQ03001 7570 aaKnown RBP5.3□□□□□ -1.56
CPSF1-208ENST00000532560 KRTAP12-3P60328 96 aa5.3□□□□□ -1.56
CPSF1-208ENST00000532560 KRTAP4-9Q9BYQ8 210 aa5.19□□□□□ -1.58
CPSF1-208ENST00000532560 KRTAP4-3Q9BYR4 195 aa5.15□□□□□ -1.59
CPSF1-208ENST00000532560 KRTAP4-7Q9BYR0 210 aa5.09□□□□□ -1.59
CPSF1-208ENST00000532560 HMCN1Q96RW7 5635 aa5.06□□□□□ -1.6
CPSF1-208ENST00000532560 A0A0A0MQY5 61 aa5.05□□□□□ -1.6
CPSF1-208ENST00000532560 KRTAP19-4Q3LI73 84 aa5.05□□□□□ -1.6
CPSF1-208ENST00000532560 AHNAK2Q8IVF2 5795 aa5.03□□□□□ -1.6
CPSF1-208ENST00000532560 LCE4AQ5TA78 99 aa5.03□□□□□ -1.6
CPSF1-208ENST00000532560 LCE1DQ5T752 114 aa5.02□□□□□ -1.61
CPSF1-208ENST00000532560 KRTAP5-4Q6L8H1 288 aa4.98□□□□□ -1.61
CPSF1-208ENST00000532560 MT4P47944 62 aa4.92□□□□□ -1.62
CPSF1-208ENST00000532560 LCE3CQ5T5A8 94 aa4.89□□□□□ -1.63
CPSF1-208ENST00000532560 KRTAP5-5Q701N2 237 aaPredicted RBP4.88□□□□□ -1.63
CPSF1-208ENST00000532560 KRTAP5-10Q6L8G5 202 aa4.87□□□□□ -1.63
CPSF1-208ENST00000532560 LOC100996750A0A140TA64 210 aa4.81□□□□□ -1.64
CPSF1-208ENST00000532560 KRTAP4-6Q9BYQ5 205 aa4.81□□□□□ -1.64
CPSF1-208ENST00000532560 KRTAP5-7Q6L8G8 165 aa4.72□□□□□ -1.65
CPSF1-208ENST00000532560 INE1O15225 51 aa4.68□□□□□ -1.66
CPSF1-208ENST00000532560 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
CPSF1-208ENST00000532560 KRTAP20-2Q3LI61 65 aa4.68□□□□□ -1.66
CPSF1-208ENST00000532560 KRTAP5-3Q6L8H2 238 aa4.65□□□□□ -1.67
CPSF1-208ENST00000532560 KRTAP9-6A8MVA2 160 aa4.61□□□□□ -1.67
CPSF1-208ENST00000532560 MT1AP04731 61 aa4.59□□□□□ -1.67
CPSF1-208ENST00000532560 KRTAP6-1Q3LI64 71 aa4.53□□□□□ -1.68
CPSF1-208ENST00000532560 SYNE1Q8NF91 8797 aaKnown RBP4.52□□□□□ -1.69
CPSF1-208ENST00000532560 KRTAP5-2Q701N4 177 aa4.4□□□□□ -1.71
CPSF1-208ENST00000532560 KRTAP9-4Q9BYQ2 154 aa4.39□□□□□ -1.71
CPSF1-208ENST00000532560 KRTAP6-2Q3LI66 62 aa4.29□□□□□ -1.72
CPSF1-208ENST00000532560 AHNAKQ09666 5890 aaKnown RBP4.29□□□□□ -1.72
CPSF1-208ENST00000532560 MUC5ACP98088 5654 aa4.23□□□□□ -1.73
CPSF1-208ENST00000532560 KRTAP4-11Q9BYQ6 195 aa4.22□□□□□ -1.73
CPSF1-208ENST00000532560 MUC5BQ9HC84 5762 aaPredicted RBP4.19□□□□□ -1.74
CPSF1-208ENST00000532560 MT3P25713 68 aa4.18□□□□□ -1.74
CPSF1-208ENST00000532560 KRTAP5-8O75690 187 aa4.08□□□□□ -1.76
CPSF1-208ENST00000532560 OBSCNQ5VST9 7968 aa3.97□□□□□ -1.77
CPSF1-208ENST00000532560 KRTAP9-9Q9BYP9 154 aa3.93□□□□□ -1.78
CPSF1-208ENST00000532560 KRTAP5-1Q6L8H4 278 aa3.9□□□□□ -1.79
CPSF1-208ENST00000532560 LCE1EQ5T753 118 aa3.8□□□□□ -1.8
CPSF1-208ENST00000532560 LCE3DQ9BYE3 92 aa3.69□□□□□ -1.82
CPSF1-208ENST00000532560 LCE3EQ5T5B0 92 aa3.65□□□□□ -1.83
CPSF1-208ENST00000532560 KRTAP4-2Q9BYR5 136 aa3.58□□□□□ -1.84
CPSF1-208ENST00000532560 LCE1CQ5T751 118 aa3.53□□□□□ -1.84
CPSF1-208ENST00000532560 LCE1BQ5T7P3 118 aa3.53□□□□□ -1.84
CPSF1-208ENST00000532560 PRM1P04553 51 aa3.33□□□□□ -1.88
CPSF1-208ENST00000532560 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.25□□□□□ -1.89
CPSF1-208ENST00000532560 KRTAP5-11Q6L8G4 156 aa3.2□□□□□ -1.9
CPSF1-208ENST00000532560 KRTAP4-12Q9BQ66 201 aa3.14□□□□□ -1.91
CPSF1-208ENST00000532560 LCE1FQ5T754 118 aa3.06□□□□□ -1.92
CPSF1-208ENST00000532560 KRTAP21-2Q3LI59 83 aa2.99□□□□□ -1.93
CPSF1-208ENST00000532560 PHGR1C9JFL3 82 aa2.87□□□□□ -1.95
CPSF1-208ENST00000532560 KRTAP4-4Q9BYR3 166 aa2.67□□□□□ -1.98
CPSF1-208ENST00000532560 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
CPSF1-208ENST00000532560 KRTAP21-1Q3LI58 79 aa2.17□□□□□ -2.06
CPSF1-208ENST00000532560 MUC16Q8WXI7 14507 aa1.78□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 10.9 ms