RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 KRTAP9-2Q9BYQ4 174 aa4.49□□□□□ -1.69
PCF11-204ENST00000530660 KRTAP4-3Q9BYR4 195 aa4.45□□□□□ -1.7
PCF11-204ENST00000530660 CRCT1Q9UGL9 99 aa4.44□□□□□ -1.7
PCF11-204ENST00000530660 KRTAP19-4Q3LI73 84 aa4.43□□□□□ -1.7
PCF11-204ENST00000530660 MT1GP13640 62 aa4.42□□□□□ -1.7
PCF11-204ENST00000530660 KRTAP4-9Q9BYQ8 210 aa4.38□□□□□ -1.71
PCF11-204ENST00000530660 KRTAP9-7A8MTY7 169 aa4.33□□□□□ -1.72
PCF11-204ENST00000530660 SYNE1Q8NF91 8797 aaKnown RBP4.32□□□□□ -1.72
PCF11-204ENST00000530660 FCGBPQ9Y6R7 5405 aaPredicted RBP4.31□□□□□ -1.72
PCF11-204ENST00000530660 PRM1P04553 51 aa4.3□□□□□ -1.72
PCF11-204ENST00000530660 DSTQ03001 7570 aaKnown RBP4.28□□□□□ -1.72
PCF11-204ENST00000530660 LCE3BQ5TA77 95 aa4.27□□□□□ -1.73
PCF11-204ENST00000530660 LCE2AQ5TA79 106 aaPredicted RBP4.26□□□□□ -1.73
PCF11-204ENST00000530660 KRTAP6-3Q3LI67 103 aa4.25□□□□□ -1.73
PCF11-204ENST00000530660 SSPOA2VEC9 5147 aa4.25□□□□□ -1.73
PCF11-204ENST00000530660 OBSCNQ5VST9 7968 aa4.25□□□□□ -1.73
PCF11-204ENST00000530660 MUC12Q9UKN1 5478 aa4.23□□□□□ -1.73
PCF11-204ENST00000530660 LCE2DQ5TA82 110 aaPredicted RBP4.2□□□□□ -1.74
PCF11-204ENST00000530660 KRTAP5-5Q701N2 237 aaPredicted RBP4.2□□□□□ -1.74
PCF11-204ENST00000530660 MT1MQ8N339 61 aa4.19□□□□□ -1.74
PCF11-204ENST00000530660 LCE1AQ5T7P2 110 aa4.17□□□□□ -1.74
PCF11-204ENST00000530660 KRTAP2-2Q9BYT5 123 aa4.13□□□□□ -1.75
PCF11-204ENST00000530660 KRTAP19-3Q7Z4W3 81 aa4.12□□□□□ -1.75
PCF11-204ENST00000530660 LCE3DQ9BYE3 92 aa4.11□□□□□ -1.75
PCF11-204ENST00000530660 LCE3EQ5T5B0 92 aa4.1□□□□□ -1.75
PCF11-204ENST00000530660 MT1AP04731 61 aa4.05□□□□□ -1.76
PCF11-204ENST00000530660 KRTAP19-6Q3LI70 58 aa4.01□□□□□ -1.77
PCF11-204ENST00000530660 KRTAP6-2Q3LI66 62 aa3.94□□□□□ -1.78
PCF11-204ENST00000530660 LCE1EQ5T753 118 aa3.94□□□□□ -1.78
PCF11-204ENST00000530660 KRTAP6-1Q3LI64 71 aa3.93□□□□□ -1.78
PCF11-204ENST00000530660 LCE5AQ5TCM9 118 aa3.92□□□□□ -1.78
PCF11-204ENST00000530660 SYNE2Q8WXH0 6885 aaKnown RBP3.91□□□□□ -1.78
PCF11-204ENST00000530660 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.88□□□□□ -1.79
PCF11-204ENST00000530660 SPRR2FQ96RM1 72 aa3.85□□□□□ -1.79
PCF11-204ENST00000530660 MACF1Q9UPN3 7388 aaKnown RBP3.8□□□□□ -1.8
PCF11-204ENST00000530660 LCE1DQ5T752 114 aa3.77□□□□□ -1.81
PCF11-204ENST00000530660 KRTAP4-6Q9BYQ5 205 aa3.7□□□□□ -1.82
PCF11-204ENST00000530660 MDN1Q9NU22 5596 aa3.67□□□□□ -1.82
PCF11-204ENST00000530660 KRTAP9-4Q9BYQ2 154 aa3.54□□□□□ -1.84
PCF11-204ENST00000530660 NEBP20929 6669 aa3.49□□□□□ -1.85
PCF11-204ENST00000530660 KRTAP20-1Q3LI63 56 aa3.46□□□□□ -1.86
PCF11-204ENST00000530660 MT3P25713 68 aa3.37□□□□□ -1.87
PCF11-204ENST00000530660 SPRR2AP35326 72 aa3.37□□□□□ -1.87
PCF11-204ENST00000530660 SPRR2EP22531 72 aa3.36□□□□□ -1.87
PCF11-204ENST00000530660 SPRR2BP35325 72 aa3.36□□□□□ -1.87
PCF11-204ENST00000530660 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
PCF11-204ENST00000530660 KRTAP5-9P26371 169 aa3.28□□□□□ -1.88
PCF11-204ENST00000530660 GPR98Q8WXG9 6306 aa3.28□□□□□ -1.88
PCF11-204ENST00000530660 SPRR2DP22532 72 aa3.24□□□□□ -1.89
PCF11-204ENST00000530660 KRTAP4-11Q9BYQ6 195 aa3.23□□□□□ -1.89
PCF11-204ENST00000530660 MUC19Q7Z5P9 8384 aa3.18□□□□□ -1.9
PCF11-204ENST00000530660 MUC5ACP98088 5654 aa3.03□□□□□ -1.92
PCF11-204ENST00000530660 MT4P47944 62 aa3□□□□□ -1.93
PCF11-204ENST00000530660 KRTAP5-4Q6L8H1 288 aa2.96□□□□□ -1.94
PCF11-204ENST00000530660 KRTAP4-12Q9BQ66 201 aa2.92□□□□□ -1.94
PCF11-204ENST00000530660 KRTAP5-10Q6L8G5 202 aa2.91□□□□□ -1.94
PCF11-204ENST00000530660 KRTAP5-2Q701N4 177 aa2.83□□□□□ -1.96
PCF11-204ENST00000530660 KRTAP20-2Q3LI61 65 aa2.82□□□□□ -1.96
PCF11-204ENST00000530660 KRTAP9-9Q9BYP9 154 aa2.78□□□□□ -1.96
PCF11-204ENST00000530660 LCE1BQ5T7P3 118 aa2.78□□□□□ -1.96
PCF11-204ENST00000530660 KRTAP4-2Q9BYR5 136 aa2.74□□□□□ -1.97
PCF11-204ENST00000530660 HMCN1Q96RW7 5635 aa2.74□□□□□ -1.97
PCF11-204ENST00000530660 AHNAK2Q8IVF2 5795 aa2.73□□□□□ -1.97
PCF11-204ENST00000530660 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
PCF11-204ENST00000530660 KRTAP5-3Q6L8H2 238 aa2.7□□□□□ -1.98
PCF11-204ENST00000530660 KRTAP21-1Q3LI58 79 aa2.68□□□□□ -1.98
PCF11-204ENST00000530660 LCE1CQ5T751 118 aa2.65□□□□□ -1.99
PCF11-204ENST00000530660 KRTAP5-7Q6L8G8 165 aa2.63□□□□□ -1.99
PCF11-204ENST00000530660 LCE4AQ5TA78 99 aa2.62□□□□□ -1.99
PCF11-204ENST00000530660 KRTAP21-2Q3LI59 83 aa2.49□□□□□ -2.01
PCF11-204ENST00000530660 KRTAP4-4Q9BYR3 166 aa2.46□□□□□ -2.02
PCF11-204ENST00000530660 AHNAKQ09666 5890 aaKnown RBP2.46□□□□□ -2.02
PCF11-204ENST00000530660 MUC5BQ9HC84 5762 aaPredicted RBP2.35□□□□□ -2.03
PCF11-204ENST00000530660 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.34□□□□□ -2.03
PCF11-204ENST00000530660 KRTAP5-8O75690 187 aa2.19□□□□□ -2.06
PCF11-204ENST00000530660 KRTAP5-11Q6L8G4 156 aa2.08□□□□□ -2.08
PCF11-204ENST00000530660 PHGR1C9JFL3 82 aa1.83□□□□□ -2.12
PCF11-204ENST00000530660 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 75 ms