RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 FSIP2Q5CZC0 6907 aa6.5□□□□□ -1.37
PCF11-203ENST00000530304 KRTAP9-2Q9BYQ4 174 aa6.39□□□□□ -1.39
PCF11-203ENST00000530304 KRTAP4-3Q9BYR4 195 aa6.37□□□□□ -1.39
PCF11-203ENST00000530304 LOC100996750A0A140TA64 210 aa6.36□□□□□ -1.39
PCF11-203ENST00000530304 KRTAP9-6A0A140TA67 174 aa6.35□□□□□ -1.39
PCF11-203ENST00000530304 LCE2DQ5TA82 110 aaPredicted RBP6.35□□□□□ -1.39
PCF11-203ENST00000530304 FCGBPQ9Y6R7 5405 aaPredicted RBP6.33□□□□□ -1.4
PCF11-203ENST00000530304 MT1GP13640 62 aa6.3□□□□□ -1.4
PCF11-203ENST00000530304 KRTAP19-3Q7Z4W3 81 aa6.28□□□□□ -1.4
PCF11-203ENST00000530304 MT1MQ8N339 61 aa6.28□□□□□ -1.4
PCF11-203ENST00000530304 MUC12Q9UKN1 5478 aa6.27□□□□□ -1.41
PCF11-203ENST00000530304 CRCT1Q9UGL9 99 aa6.15□□□□□ -1.43
PCF11-203ENST00000530304 LCE5AQ5TCM9 118 aa6.05□□□□□ -1.44
PCF11-203ENST00000530304 DSTQ03001 7570 aaKnown RBP6.04□□□□□ -1.44
PCF11-203ENST00000530304 SPRR2FQ96RM1 72 aa6.02□□□□□ -1.45
PCF11-203ENST00000530304 KRTAP12-4P60329 112 aa5.92□□□□□ -1.46
PCF11-203ENST00000530304 MACF1Q9UPN3 7388 aaKnown RBP5.9□□□□□ -1.47
PCF11-203ENST00000530304 LCE3BQ5TA77 95 aa5.83□□□□□ -1.48
PCF11-203ENST00000530304 KRTAP4-9Q9BYQ8 210 aa5.72□□□□□ -1.49
PCF11-203ENST00000530304 KRTAP6-1Q3LI64 71 aa5.72□□□□□ -1.49
PCF11-203ENST00000530304 SYNE2Q8WXH0 6885 aaKnown RBP5.71□□□□□ -1.5
PCF11-203ENST00000530304 MT1AP04731 61 aa5.67□□□□□ -1.5
PCF11-203ENST00000530304 MDN1Q9NU22 5596 aa5.66□□□□□ -1.5
PCF11-203ENST00000530304 KRTAP9-7A8MTY7 169 aa5.64□□□□□ -1.51
PCF11-203ENST00000530304 SYNE1Q8NF91 8797 aaKnown RBP5.6□□□□□ -1.51
PCF11-203ENST00000530304 LCE1AQ5T7P2 110 aa5.6□□□□□ -1.51
PCF11-203ENST00000530304 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.6□□□□□ -1.51
PCF11-203ENST00000530304 KRTAP5-9P26371 169 aa5.55□□□□□ -1.52
PCF11-203ENST00000530304 KRTAP5-5Q701N2 237 aaPredicted RBP5.55□□□□□ -1.52
PCF11-203ENST00000530304 LCE3DQ9BYE3 92 aa5.52□□□□□ -1.53
PCF11-203ENST00000530304 SPRR2EP22531 72 aa5.44□□□□□ -1.54
PCF11-203ENST00000530304 SPRR2BP35325 72 aa5.44□□□□□ -1.54
PCF11-203ENST00000530304 SPRR2AP35326 72 aa5.44□□□□□ -1.54
PCF11-203ENST00000530304 LCE3EQ5T5B0 92 aa5.44□□□□□ -1.54
PCF11-203ENST00000530304 KRTAP9-4Q9BYQ2 154 aa5.32□□□□□ -1.56
PCF11-203ENST00000530304 PRM1P04553 51 aa5.23□□□□□ -1.57
PCF11-203ENST00000530304 SPRR2DP22532 72 aa5.2□□□□□ -1.58
PCF11-203ENST00000530304 KRTAP6-3Q3LI67 103 aa5.18□□□□□ -1.58
PCF11-203ENST00000530304 KRTAP6-2Q3LI66 62 aa5.11□□□□□ -1.59
PCF11-203ENST00000530304 MT3P25713 68 aa5.07□□□□□ -1.6
PCF11-203ENST00000530304 NEBP20929 6669 aa5.03□□□□□ -1.6
PCF11-203ENST00000530304 OBSCNQ5VST9 7968 aa4.99□□□□□ -1.61
PCF11-203ENST00000530304 KRTAP20-1Q3LI63 56 aa4.94□□□□□ -1.62
PCF11-203ENST00000530304 KRTAP5-4Q6L8H1 288 aa4.83□□□□□ -1.64
PCF11-203ENST00000530304 KRTAP4-6Q9BYQ5 205 aa4.67□□□□□ -1.66
PCF11-203ENST00000530304 MT4P47944 62 aa4.6□□□□□ -1.67
PCF11-203ENST00000530304 KRTAP2-2Q9BYT5 123 aa4.6□□□□□ -1.67
PCF11-203ENST00000530304 KRTAP20-2Q3LI61 65 aa4.54□□□□□ -1.68
PCF11-203ENST00000530304 KRTAP5-2Q701N4 177 aa4.53□□□□□ -1.68
PCF11-203ENST00000530304 LCE4AQ5TA78 99 aa4.49□□□□□ -1.69
PCF11-203ENST00000530304 GPR98Q8WXG9 6306 aa4.39□□□□□ -1.71
PCF11-203ENST00000530304 HMCN1Q96RW7 5635 aa4.37□□□□□ -1.71
PCF11-203ENST00000530304 KRTAP5-3Q6L8H2 238 aa4.32□□□□□ -1.72
PCF11-203ENST00000530304 LCE1DQ5T752 114 aa4.3□□□□□ -1.72
PCF11-203ENST00000530304 MUC5ACP98088 5654 aa4.27□□□□□ -1.73
PCF11-203ENST00000530304 LCE1EQ5T753 118 aa4.12□□□□□ -1.75
PCF11-203ENST00000530304 LCE1BQ5T7P3 118 aa4.09□□□□□ -1.75
PCF11-203ENST00000530304 KRTAP5-10Q6L8G5 202 aa4.03□□□□□ -1.76
PCF11-203ENST00000530304 KRTAP5-1Q6L8H4 278 aa3.98□□□□□ -1.77
PCF11-203ENST00000530304 KRTAP4-11Q9BYQ6 195 aa3.95□□□□□ -1.78
PCF11-203ENST00000530304 AHNAK2Q8IVF2 5795 aa3.93□□□□□ -1.78
PCF11-203ENST00000530304 KRTAP4-2Q9BYR5 136 aa3.92□□□□□ -1.78
PCF11-203ENST00000530304 LCE1CQ5T751 118 aa3.91□□□□□ -1.78
PCF11-203ENST00000530304 KRTAP5-7Q6L8G8 165 aa3.89□□□□□ -1.79
PCF11-203ENST00000530304 KRTAP21-2Q3LI59 83 aa3.69□□□□□ -1.82
PCF11-203ENST00000530304 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.69□□□□□ -1.82
PCF11-203ENST00000530304 KRTAP5-8O75690 187 aa3.57□□□□□ -1.84
PCF11-203ENST00000530304 AHNAKQ09666 5890 aaKnown RBP3.53□□□□□ -1.84
PCF11-203ENST00000530304 MUC5BQ9HC84 5762 aaPredicted RBP3.39□□□□□ -1.87
PCF11-203ENST00000530304 KRTAP4-4Q9BYR3 166 aa3.38□□□□□ -1.87
PCF11-203ENST00000530304 KRTAP5-11Q6L8G4 156 aa3.34□□□□□ -1.88
PCF11-203ENST00000530304 KRTAP21-1Q3LI58 79 aa3.29□□□□□ -1.88
PCF11-203ENST00000530304 MUC19Q7Z5P9 8384 aa3.2□□□□□ -1.9
PCF11-203ENST00000530304 KRTAP4-12Q9BQ66 201 aa3.16□□□□□ -1.9
PCF11-203ENST00000530304 KRTAP9-9Q9BYP9 154 aa3.11□□□□□ -1.91
PCF11-203ENST00000530304 PHGR1C9JFL3 82 aa2.89□□□□□ -1.95
PCF11-203ENST00000530304 LCE1FQ5T754 118 aa2.81□□□□□ -1.96
PCF11-203ENST00000530304 MUC16Q8WXI7 14507 aa1.92□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 78.3 ms