RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 FCGBPQ9Y6R7 5405 aaPredicted RBP4.69□□□□□ -1.66
USP48-213ENST00000529637 KRTAP4-3Q9BYR4 195 aa4.67□□□□□ -1.66
USP48-213ENST00000529637 CRCT1Q9UGL9 99 aa4.67□□□□□ -1.66
USP48-213ENST00000529637 LOC100996750A0A140TA64 210 aa4.67□□□□□ -1.66
USP48-213ENST00000529637 KRTAP19-4Q3LI73 84 aa4.65□□□□□ -1.66
USP48-213ENST00000529637 MT1GP13640 62 aa4.61□□□□□ -1.67
USP48-213ENST00000529637 DSTQ03001 7570 aaKnown RBP4.6□□□□□ -1.67
USP48-213ENST00000529637 LCE2DQ5TA82 110 aaPredicted RBP4.57□□□□□ -1.68
USP48-213ENST00000529637 KRTAP12-4P60329 112 aa4.56□□□□□ -1.68
USP48-213ENST00000529637 KRTAP19-3Q7Z4W3 81 aa4.53□□□□□ -1.68
USP48-213ENST00000529637 MT1MQ8N339 61 aa4.52□□□□□ -1.69
USP48-213ENST00000529637 SPRR2FQ96RM1 72 aa4.5□□□□□ -1.69
USP48-213ENST00000529637 MACF1Q9UPN3 7388 aaKnown RBP4.38□□□□□ -1.71
USP48-213ENST00000529637 KRTAP4-9Q9BYQ8 210 aa4.35□□□□□ -1.71
USP48-213ENST00000529637 SYNE1Q8NF91 8797 aaKnown RBP4.33□□□□□ -1.72
USP48-213ENST00000529637 KRTAP9-2Q9BYQ4 174 aa4.33□□□□□ -1.72
USP48-213ENST00000529637 LCE5AQ5TCM9 118 aa4.33□□□□□ -1.72
USP48-213ENST00000529637 LCE3BQ5TA77 95 aa4.3□□□□□ -1.72
USP48-213ENST00000529637 SYNE2Q8WXH0 6885 aaKnown RBP4.29□□□□□ -1.72
USP48-213ENST00000529637 MDN1Q9NU22 5596 aa4.24□□□□□ -1.73
USP48-213ENST00000529637 KRTAP9-7A8MTY7 169 aa4.16□□□□□ -1.74
USP48-213ENST00000529637 KRTAP6-1Q3LI64 71 aa4.13□□□□□ -1.75
USP48-213ENST00000529637 PRM1P04553 51 aa4.09□□□□□ -1.75
USP48-213ENST00000529637 KRTAP5-5Q701N2 237 aaPredicted RBP4.09□□□□□ -1.76
USP48-213ENST00000529637 OBSCNQ5VST9 7968 aa4.08□□□□□ -1.76
USP48-213ENST00000529637 SPRR2EP22531 72 aa4.08□□□□□ -1.76
USP48-213ENST00000529637 SPRR2BP35325 72 aa4.08□□□□□ -1.76
USP48-213ENST00000529637 SPRR2AP35326 72 aa4.08□□□□□ -1.76
USP48-213ENST00000529637 LCE1AQ5T7P2 110 aa4.07□□□□□ -1.76
USP48-213ENST00000529637 LCE3DQ9BYE3 92 aa4.06□□□□□ -1.76
USP48-213ENST00000529637 MT1AP04731 61 aa4.05□□□□□ -1.76
USP48-213ENST00000529637 LCE3EQ5T5B0 92 aa4.02□□□□□ -1.77
USP48-213ENST00000529637 KRTAP5-9P26371 169 aa3.96□□□□□ -1.78
USP48-213ENST00000529637 KRTAP9-6A0A140TA67 174 aa3.95□□□□□ -1.78
USP48-213ENST00000529637 SPRR2DP22532 72 aa3.89□□□□□ -1.79
USP48-213ENST00000529637 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.85□□□□□ -1.79
USP48-213ENST00000529637 KRTAP6-2Q3LI66 62 aa3.85□□□□□ -1.79
USP48-213ENST00000529637 KRTAP6-3Q3LI67 103 aa3.8□□□□□ -1.8
USP48-213ENST00000529637 KRTAP9-4Q9BYQ2 154 aa3.79□□□□□ -1.8
USP48-213ENST00000529637 MT3P25713 68 aa3.67□□□□□ -1.82
USP48-213ENST00000529637 KRTAP2-2Q9BYT5 123 aa3.61□□□□□ -1.83
USP48-213ENST00000529637 NEBP20929 6669 aa3.58□□□□□ -1.84
USP48-213ENST00000529637 MT4P47944 62 aa3.5□□□□□ -1.85
USP48-213ENST00000529637 KRTAP4-6Q9BYQ5 205 aa3.45□□□□□ -1.86
USP48-213ENST00000529637 KRTAP5-4Q6L8H1 288 aa3.4□□□□□ -1.86
USP48-213ENST00000529637 LCE1EQ5T753 118 aa3.37□□□□□ -1.87
USP48-213ENST00000529637 KRTAP20-2Q3LI61 65 aa3.29□□□□□ -1.88
USP48-213ENST00000529637 HMCN1Q96RW7 5635 aa3.26□□□□□ -1.89
USP48-213ENST00000529637 LCE4AQ5TA78 99 aa3.25□□□□□ -1.89
USP48-213ENST00000529637 LCE1DQ5T752 114 aa3.24□□□□□ -1.89
USP48-213ENST00000529637 MUC5ACP98088 5654 aa3.18□□□□□ -1.9
USP48-213ENST00000529637 KRTAP5-2Q701N4 177 aa3.17□□□□□ -1.9
USP48-213ENST00000529637 KRTAP20-1Q3LI63 56 aa3.15□□□□□ -1.9
USP48-213ENST00000529637 LCE1BQ5T7P3 118 aa3.1□□□□□ -1.91
USP48-213ENST00000529637 KRTAP4-11Q9BYQ6 195 aa3.1□□□□□ -1.91
USP48-213ENST00000529637 KRTAP5-3Q6L8H2 238 aa3.06□□□□□ -1.92
USP48-213ENST00000529637 KRTAP5-10Q6L8G5 202 aa2.93□□□□□ -1.94
USP48-213ENST00000529637 KRTAP4-2Q9BYR5 136 aa2.79□□□□□ -1.96
USP48-213ENST00000529637 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
USP48-213ENST00000529637 LCE1CQ5T751 118 aa2.74□□□□□ -1.97
USP48-213ENST00000529637 KRTAP4-12Q9BQ66 201 aa2.72□□□□□ -1.97
USP48-213ENST00000529637 AHNAK2Q8IVF2 5795 aa2.71□□□□□ -1.98
USP48-213ENST00000529637 MUC19Q7Z5P9 8384 aa2.69□□□□□ -1.98
USP48-213ENST00000529637 KRTAP21-2Q3LI59 83 aa2.6□□□□□ -1.99
USP48-213ENST00000529637 KRTAP9-9Q9BYP9 154 aa2.58□□□□□ -2
USP48-213ENST00000529637 KRTAP5-8O75690 187 aa2.57□□□□□ -2
USP48-213ENST00000529637 KRTAP4-4Q9BYR3 166 aa2.56□□□□□ -2
USP48-213ENST00000529637 KRTAP21-1Q3LI58 79 aa2.55□□□□□ -2
USP48-213ENST00000529637 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.53□□□□□ -2.01
USP48-213ENST00000529637 LCE1FQ5T754 118 aa2.52□□□□□ -2.01
USP48-213ENST00000529637 MUC5BQ9HC84 5762 aaPredicted RBP2.49□□□□□ -2.01
USP48-213ENST00000529637 KRTAP5-7Q6L8G8 165 aa2.42□□□□□ -2.02
USP48-213ENST00000529637 GPR98Q8WXG9 6306 aa2.39□□□□□ -2.03
USP48-213ENST00000529637 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
USP48-213ENST00000529637 AHNAKQ09666 5890 aaKnown RBP2.09□□□□□ -2.08
USP48-213ENST00000529637 PHGR1C9JFL3 82 aa2.05□□□□□ -2.08
USP48-213ENST00000529637 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 13.2 ms