RNA–Protein interactions for RNA: ENST00000529526.5

CTNND1-220, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-220ENST00000529526 LOC100996750A0A140TA64 210 aa2.58□□□□□ -2
CTNND1-220ENST00000529526 LCE2DQ5TA82 110 aaPredicted RBP2.58□□□□□ -2
CTNND1-220ENST00000529526 MT4P47944 62 aa2.55□□□□□ -2
CTNND1-220ENST00000529526 FLGP20930 4061 aaPredicted RBP2.54□□□□□ -2
CTNND1-220ENST00000529526 KRTAP4-3Q9BYR4 195 aa2.54□□□□□ -2
CTNND1-220ENST00000529526 MT1MQ8N339 61 aa2.54□□□□□ -2
CTNND1-220ENST00000529526 PRM1P04553 51 aa2.49□□□□□ -2.01
CTNND1-220ENST00000529526 KRTAP19-6Q3LI70 58 aa2.47□□□□□ -2.01
CTNND1-220ENST00000529526 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
CTNND1-220ENST00000529526 HMCN2Q8NDA2 5059 aa2.43□□□□□ -2.02
CTNND1-220ENST00000529526 LCE1DQ5T752 114 aa2.42□□□□□ -2.02
CTNND1-220ENST00000529526 MUC2Q02817 5179 aa2.42□□□□□ -2.02
CTNND1-220ENST00000529526 KRTAP4-9Q9BYQ8 210 aa2.4□□□□□ -2.03
CTNND1-220ENST00000529526 RNF213Q63HN8 5207 aa2.39□□□□□ -2.03
CTNND1-220ENST00000529526 KRTAP19-7Q3SYF9 63 aa2.38□□□□□ -2.03
CTNND1-220ENST00000529526 UBR4Q5T4S7 5183 aa2.37□□□□□ -2.03
CTNND1-220ENST00000529526 SYNE1Q8NF91 8797 aaKnown RBP2.36□□□□□ -2.03
CTNND1-220ENST00000529526 LCE2AQ5TA79 106 aaPredicted RBP2.36□□□□□ -2.03
CTNND1-220ENST00000529526 FAT4Q6V0I7 4981 aa2.34□□□□□ -2.03
CTNND1-220ENST00000529526 MT1AP04731 61 aa2.33□□□□□ -2.04
CTNND1-220ENST00000529526 FSIP2Q5CZC0 6907 aa2.32□□□□□ -2.04
CTNND1-220ENST00000529526 KRTAP2-3P0C7H8 128 aa2.31□□□□□ -2.04
CTNND1-220ENST00000529526 KRTAP2-4Q9BYR9 128 aa2.31□□□□□ -2.04
CTNND1-220ENST00000529526 KRTAP2-1Q9BYU5 128 aa2.31□□□□□ -2.04
CTNND1-220ENST00000529526 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.3□□□□□ -2.04
CTNND1-220ENST00000529526 SYNE2Q8WXH0 6885 aaKnown RBP2.29□□□□□ -2.04
CTNND1-220ENST00000529526 LCE5AQ5TCM9 118 aa2.27□□□□□ -2.05
CTNND1-220ENST00000529526 KRTAP6-1Q3LI64 71 aa2.24□□□□□ -2.05
CTNND1-220ENST00000529526 OBSCNQ5VST9 7968 aa2.24□□□□□ -2.05
CTNND1-220ENST00000529526 KRTAP9-6A8MVA2 160 aa2.22□□□□□ -2.05
CTNND1-220ENST00000529526 KRTAP6-2Q3LI66 62 aa2.22□□□□□ -2.05
CTNND1-220ENST00000529526 KRTAP6-3Q3LI67 103 aa2.2□□□□□ -2.06
CTNND1-220ENST00000529526 KRTAP9-4Q9BYQ2 154 aa2.18□□□□□ -2.06
CTNND1-220ENST00000529526 GPR98Q8WXG9 6306 aa2.15□□□□□ -2.06
CTNND1-220ENST00000529526 LCE1AQ5T7P2 110 aa2.14□□□□□ -2.07
CTNND1-220ENST00000529526 KRTAP2-2Q9BYT5 123 aa2.13□□□□□ -2.07
CTNND1-220ENST00000529526 LCE4AQ5TA78 99 aa2.1□□□□□ -2.07
CTNND1-220ENST00000529526 LCE1CQ5T751 118 aa2.07□□□□□ -2.08
CTNND1-220ENST00000529526 LCE1EQ5T753 118 aa2.07□□□□□ -2.08
CTNND1-220ENST00000529526 LCE1FQ5T754 118 aa2.07□□□□□ -2.08
CTNND1-220ENST00000529526 USH2AO75445 5202 aa2.06□□□□□ -2.08
CTNND1-220ENST00000529526 MACF1Q9UPN3 7388 aaKnown RBP2.03□□□□□ -2.08
CTNND1-220ENST00000529526 NEBP20929 6669 aa2.01□□□□□ -2.09
CTNND1-220ENST00000529526 KRTAP4-2Q9BYR5 136 aa1.97□□□□□ -2.09
CTNND1-220ENST00000529526 KRTAP9-9Q9BYP9 154 aa1.97□□□□□ -2.09
CTNND1-220ENST00000529526 KMT2DO14686 5537 aa1.95□□□□□ -2.1
CTNND1-220ENST00000529526 FCGBPQ9Y6R7 5405 aaPredicted RBP1.93□□□□□ -2.1
CTNND1-220ENST00000529526 SSPOA2VEC9 5147 aa1.92□□□□□ -2.1
CTNND1-220ENST00000529526 DSTQ03001 7570 aaKnown RBP1.91□□□□□ -2.1
CTNND1-220ENST00000529526 KRTAP4-6Q9BYQ5 205 aa1.86□□□□□ -2.11
CTNND1-220ENST00000529526 KRTAP4-11Q9BYQ6 195 aa1.86□□□□□ -2.11
CTNND1-220ENST00000529526 MUC19Q7Z5P9 8384 aa1.85□□□□□ -2.11
CTNND1-220ENST00000529526 KRTAP5-9P26371 169 aa1.81□□□□□ -2.12
CTNND1-220ENST00000529526 MUC12Q9UKN1 5478 aa1.78□□□□□ -2.12
CTNND1-220ENST00000529526 KRTAP20-2Q3LI61 65 aa1.78□□□□□ -2.12
CTNND1-220ENST00000529526 MDN1Q9NU22 5596 aa1.77□□□□□ -2.13
CTNND1-220ENST00000529526 KRTAP4-4Q9BYR3 166 aa1.75□□□□□ -2.13
CTNND1-220ENST00000529526 KRTAP4-12Q9BQ66 201 aa1.71□□□□□ -2.14
CTNND1-220ENST00000529526 KRTAP5-5Q701N2 237 aaPredicted RBP1.65□□□□□ -2.15
CTNND1-220ENST00000529526 KRTAP5-4Q6L8H1 288 aa1.63□□□□□ -2.15
CTNND1-220ENST00000529526 PHGR1C9JFL3 82 aa1.51□□□□□ -2.17
CTNND1-220ENST00000529526 KRTAP5-3Q6L8H2 238 aa1.48□□□□□ -2.17
CTNND1-220ENST00000529526 HMCN1Q96RW7 5635 aa1.4□□□□□ -2.19
CTNND1-220ENST00000529526 MUC5ACP98088 5654 aa1.38□□□□□ -2.19
CTNND1-220ENST00000529526 AHNAK2Q8IVF2 5795 aa1.38□□□□□ -2.19
CTNND1-220ENST00000529526 AHNAKQ09666 5890 aaKnown RBP1.38□□□□□ -2.19
CTNND1-220ENST00000529526 KRTAP5-8O75690 187 aa1.33□□□□□ -2.2
CTNND1-220ENST00000529526 KRTAP5-2Q701N4 177 aa1.32□□□□□ -2.2
CTNND1-220ENST00000529526 KRTAP5-10Q6L8G5 202 aa1.29□□□□□ -2.2
CTNND1-220ENST00000529526 MUC5BQ9HC84 5762 aaPredicted RBP1.27□□□□□ -2.21
CTNND1-220ENST00000529526 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.24□□□□□ -2.21
CTNND1-220ENST00000529526 KRTAP5-7Q6L8G8 165 aa1.2□□□□□ -2.22
CTNND1-220ENST00000529526 KRTAP5-1Q6L8H4 278 aa1.17□□□□□ -2.22
CTNND1-220ENST00000529526 KRTAP5-11Q6L8G4 156 aa1.11□□□□□ -2.23
CTNND1-220ENST00000529526 KRTAP21-2Q3LI59 83 aa1.1□□□□□ -2.23
CTNND1-220ENST00000529526 KRTAP21-1Q3LI58 79 aa1.03□□□□□ -2.24
CTNND1-220ENST00000529526 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 5.3 ms