RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	BRK1	Q8WUW1	75 aa		7.48	□□□□□ -1.21
CD44-222	ENST00000526025	KRTAP2-3	P0C7H8	128 aa		7.47	□□□□□ -1.21
CD44-222	ENST00000526025	KRTAP12-3	P60328	96 aa		7.47	□□□□□ -1.21
CD44-222	ENST00000526025	KRTAP2-4	Q9BYR9	128 aa		7.47	□□□□□ -1.21
CD44-222	ENST00000526025	MT1G	P13640	62 aa		7.43	□□□□□ -1.22
CD44-222	ENST00000526025	MT1L	Q93083	61 aa		7.42	□□□□□ -1.22
CD44-222	ENST00000526025	PP632	Q6XCG6	107 aa		7.37	□□□□□ -1.23
CD44-222	ENST00000526025	LCE3B	Q5TA77	95 aa		7.3	□□□□□ -1.24
CD44-222	ENST00000526025	MT1M	Q8N339	61 aa		7.28	□□□□□ -1.24
CD44-222	ENST00000526025	KRTAP2-2	Q9BYT5	123 aa		7.26	□□□□□ -1.25
CD44-222	ENST00000526025	KRTAP2-1	Q9BYU5	128 aa		7.26	□□□□□ -1.25
CD44-222	ENST00000526025	KRTAP19-4	Q3LI73	84 aa		7.21	□□□□□ -1.26
CD44-222	ENST00000526025	KRTAP15-1	Q3LI76	137 aa		7.15	□□□□□ -1.26
CD44-222	ENST00000526025	DST	Q03001	7570 aa	Known RBP	7.12	□□□□□ -1.27
CD44-222	ENST00000526025	PMAIP1	Q13794	54 aa		7.07	□□□□□ -1.28
CD44-222	ENST00000526025	KRTAP4-3	Q9BYR4	195 aa		7.01	□□□□□ -1.29
CD44-222	ENST00000526025	KRTAP4-7	Q9BYR0	210 aa		7	□□□□□ -1.29
CD44-222	ENST00000526025	PRO0628	Q9UI54	55 aa		6.99	□□□□□ -1.29
CD44-222	ENST00000526025	LCE3C	Q5T5A8	94 aa		6.93	□□□□□ -1.3
CD44-222	ENST00000526025	LCE4A	Q5TA78	99 aa		6.74	□□□□□ -1.33
CD44-222	ENST00000526025	KRTAP5-4	Q6L8H1	288 aa		6.72	□□□□□ -1.33
CD44-222	ENST00000526025	KRTAP5-5	Q701N2	237 aa	Predicted RBP	6.66	□□□□□ -1.34
CD44-222	ENST00000526025	PRAC1	Q96KF2	57 aa		6.65	□□□□□ -1.34
CD44-222	ENST00000526025	LOC100996750	A0A140TA64	210 aa		6.61	□□□□□ -1.35
CD44-222	ENST00000526025	KRTAP4-9	Q9BYQ8	210 aa		6.6	□□□□□ -1.35
CD44-222	ENST00000526025	KTN1-AS1	Q86SY8	53 aa		6.58	□□□□□ -1.36
CD44-222	ENST00000526025	LCE1D	Q5T752	114 aa		6.56	□□□□□ -1.36
CD44-222	ENST00000526025	MT4	P47944	62 aa		6.51	□□□□□ -1.37
CD44-222	ENST00000526025	KRTAP9-6	A8MVA2	160 aa		6.49	□□□□□ -1.37
CD44-222	ENST00000526025	HMCN1	Q96RW7	5635 aa		6.48	□□□□□ -1.37
CD44-222	ENST00000526025	KRTAP4-6	Q9BYQ5	205 aa		6.39	□□□□□ -1.39
CD44-222	ENST00000526025	KRTAP12-4	P60329	112 aa		6.36	□□□□□ -1.39
CD44-222	ENST00000526025	SPRR5	A0A1B0GTR4	108 aa		6.35	□□□□□ -1.39
CD44-222	ENST00000526025	MT1A	P04731	61 aa		6.34	□□□□□ -1.39
CD44-222	ENST00000526025	SYNE1	Q8NF91	8797 aa	Known RBP	6.32	□□□□□ -1.4
CD44-222	ENST00000526025	GPR98	Q8WXG9	6306 aa		6.28	□□□□□ -1.4
CD44-222	ENST00000526025	KRTAP20-2	Q3LI61	65 aa		6.27	□□□□□ -1.41
CD44-222	ENST00000526025	KRTAP6-1	Q3LI64	71 aa		6.23	□□□□□ -1.41
CD44-222	ENST00000526025	SVIP	Q8NHG7	77 aa		6.17	□□□□□ -1.42
CD44-222	ENST00000526025	AHNAK2	Q8IVF2	5795 aa		6.08	□□□□□ -1.44
CD44-222	ENST00000526025	KRTAP5-3	Q6L8H2	238 aa		6.08	□□□□□ -1.44
CD44-222	ENST00000526025	KRTAP9-4	Q9BYQ2	154 aa		6.07	□□□□□ -1.44
CD44-222	ENST00000526025	KRTAP5-2	Q701N4	177 aa		5.98	□□□□□ -1.45
CD44-222	ENST00000526025	KRTAP5-10	Q6L8G5	202 aa		5.88	□□□□□ -1.47
CD44-222	ENST00000526025	KRTAP6-2	Q3LI66	62 aa		5.86	□□□□□ -1.47
CD44-222	ENST00000526025	MT3	P25713	68 aa		5.78	□□□□□ -1.48
CD44-222	ENST00000526025		H3BS24	57 aa		5.77	□□□□□ -1.49
CD44-222	ENST00000526025	KRTAP5-7	Q6L8G8	165 aa		5.62	□□□□□ -1.51
CD44-222	ENST00000526025	LUZP6	Q538Z0	58 aa		5.61	□□□□□ -1.51
CD44-222	ENST00000526025	KRTAP4-11	Q9BYQ6	195 aa		5.61	□□□□□ -1.51
CD44-222	ENST00000526025	KRTAP5-8	O75690	187 aa		5.41	□□□□□ -1.54
CD44-222	ENST00000526025	OBSCN	Q5VST9	7968 aa		5.39	□□□□□ -1.55
CD44-222	ENST00000526025	LCE1E	Q5T753	118 aa		5.24	□□□□□ -1.57
CD44-222	ENST00000526025	KRTAP5-1	Q6L8H4	278 aa		5.24	□□□□□ -1.57
CD44-222	ENST00000526025	MUC5AC	P98088	5654 aa		5.14	□□□□□ -1.59
CD44-222	ENST00000526025	LCE3D	Q9BYE3	92 aa		5.09	□□□□□ -1.59
CD44-222	ENST00000526025	KRTAP9-9	Q9BYP9	154 aa		5.04	□□□□□ -1.6
CD44-222	ENST00000526025	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-222	ENST00000526025	AHNAK	Q09666	5890 aa	Known RBP	4.91	□□□□□ -1.62
CD44-222	ENST00000526025	NDUFAF8	A1L188	74 aa		4.9	□□□□□ -1.63
CD44-222	ENST00000526025	LCE3E	Q5T5B0	92 aa		4.87	□□□□□ -1.63
CD44-222	ENST00000526025	KRTAP4-2	Q9BYR5	136 aa		4.86	□□□□□ -1.63
CD44-222	ENST00000526025	LCE1C	Q5T751	118 aa		4.84	□□□□□ -1.63
CD44-222	ENST00000526025	LCE1B	Q5T7P3	118 aa		4.84	□□□□□ -1.63
CD44-222	ENST00000526025		A0A0A0MQY5	61 aa		4.5	□□□□□ -1.69
CD44-222	ENST00000526025	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.5	□□□□□ -1.69
CD44-222	ENST00000526025	KRTAP5-11	Q6L8G4	156 aa		4.35	□□□□□ -1.71
CD44-222	ENST00000526025	KRTAP4-12	Q9BQ66	201 aa		4.33	□□□□□ -1.72
CD44-222	ENST00000526025	LCE1F	Q5T754	118 aa		4.15	□□□□□ -1.75
CD44-222	ENST00000526025	KRTAP21-2	Q3LI59	83 aa		4.12	□□□□□ -1.75
CD44-222	ENST00000526025	INE1	O15225	51 aa		4.11	□□□□□ -1.75
CD44-222	ENST00000526025	PRM1	P04553	51 aa		3.88	□□□□□ -1.79
CD44-222	ENST00000526025	PHGR1	C9JFL3	82 aa		3.73	□□□□□ -1.81
CD44-222	ENST00000526025	KRTAP4-4	Q9BYR3	166 aa		3.62	□□□□□ -1.83
CD44-222	ENST00000526025	MUC19	Q7Z5P9	8384 aa		3.31	□□□□□ -1.88
CD44-222	ENST00000526025	KRTAP21-1	Q3LI58	79 aa		2.6	□□□□□ -1.99
CD44-222	ENST00000526025	MUC16	Q8WXI7	14507 aa		2.44	□□□□□ -2.02

Retrieved 77 of 20,778 RNA–protein pairs in 2070.6 ms