RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 FSIP2Q5CZC0 6907 aa1.28□□□□□ -2.2
CD44-217ENST00000525348 FAT1Q14517 4588 aa1.28□□□□□ -2.21
CD44-217ENST00000525348 DNAH5Q8TE73 4624 aa1.27□□□□□ -2.21
CD44-217ENST00000525348 HTN3P15516 51 aa1.27□□□□□ -2.21
CD44-217ENST00000525348 SRRM2Q9UQ35 2752 aaKnown RBP1.26□□□□□ -2.21
CD44-217ENST00000525348 A0A096LNI7 61 aa1.26□□□□□ -2.21
CD44-217ENST00000525348 A0A096LPF7 62 aa1.26□□□□□ -2.21
CD44-217ENST00000525348 FAT3Q8TDW7 4589 aa1.26□□□□□ -2.21
CD44-217ENST00000525348 PKHD1L1Q86WI1 4243 aa1.25□□□□□ -2.21
CD44-217ENST00000525348 LRP1Q07954 4544 aaKnown RBP1.24□□□□□ -2.21
CD44-217ENST00000525348 LRP2P98164 4655 aa1.24□□□□□ -2.21
CD44-217ENST00000525348 LPAP08519 4548 aa1.22□□□□□ -2.21
CD44-217ENST00000525348 SPINK6Q6UWN8 80 aa1.22□□□□□ -2.21
CD44-217ENST00000525348 DNAH8Q96JB1 4490 aa1.21□□□□□ -2.22
CD44-217ENST00000525348 MT1HL1P0DM35 61 aa1.21□□□□□ -2.22
CD44-217ENST00000525348 TNXBP22105 4242 aa1.2□□□□□ -2.22
CD44-217ENST00000525348 M0QZ58 72 aa1.2□□□□□ -2.22
CD44-217ENST00000525348 KRTAP10-4P60372 401 aaPredicted RBP1.19□□□□□ -2.22
CD44-217ENST00000525348 SPART-AS1P0CW21 52 aa1.18□□□□□ -2.22
CD44-217ENST00000525348 LINC01556Q5JQF7 62 aa1.17□□□□□ -2.22
CD44-217ENST00000525348 H3BNG1 76 aa1.15□□□□□ -2.23
CD44-217ENST00000525348 SYNE2Q8WXH0 6885 aaKnown RBP1.14□□□□□ -2.23
CD44-217ENST00000525348 KRTAP20-1Q3LI63 56 aa1.1□□□□□ -2.23
CD44-217ENST00000525348 MUC17Q685J3 4493 aa1.1□□□□□ -2.23
CD44-217ENST00000525348 USH2AO75445 5202 aa1.09□□□□□ -2.23
CD44-217ENST00000525348 FLGP20930 4061 aaPredicted RBP1.09□□□□□ -2.24
CD44-217ENST00000525348 MACF1Q9UPN3 7388 aaKnown RBP1.09□□□□□ -2.24
CD44-217ENST00000525348 SSPOA2VEC9 5147 aa1.08□□□□□ -2.24
CD44-217ENST00000525348 M0R2T5 61 aa1.08□□□□□ -2.24
CD44-217ENST00000525348 KRTAP2-3P0C7H8 128 aa1.07□□□□□ -2.24
CD44-217ENST00000525348 MT1HP80294 61 aa1.07□□□□□ -2.24
CD44-217ENST00000525348 KRTAP2-4Q9BYR9 128 aa1.07□□□□□ -2.24
CD44-217ENST00000525348 KRTAP2-1Q9BYU5 128 aa1.07□□□□□ -2.24
CD44-217ENST00000525348 NEBP20929 6669 aa1.06□□□□□ -2.24
CD44-217ENST00000525348 TNP1P09430 55 aa1.05□□□□□ -2.24
CD44-217ENST00000525348 KRTAP19-2Q3LHN2 52 aa1.01□□□□□ -2.25
CD44-217ENST00000525348 MUC12Q9UKN1 5478 aa1□□□□□ -2.25
CD44-217ENST00000525348 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
CD44-217ENST00000525348 RPS29P62273 56 aaKnown RBP1□□□□□ -2.25
CD44-217ENST00000525348 KRTAP8-1Q8IUC2 63 aa1□□□□□ -2.25
CD44-217ENST00000525348 GPR98Q8WXG9 6306 aa0.98□□□□□ -2.25
CD44-217ENST00000525348 C9orf92A6NGG3 77 aa0.98□□□□□ -2.25
CD44-217ENST00000525348 KMT2DO14686 5537 aa0.96□□□□□ -2.26
CD44-217ENST00000525348 KRTAP19-6Q3LI70 58 aa0.96□□□□□ -2.26
CD44-217ENST00000525348 MT2AP02795 61 aa0.95□□□□□ -2.26
CD44-217ENST00000525348 MT1FP04733 61 aa0.95□□□□□ -2.26
CD44-217ENST00000525348 KRTAP5-10Q6L8G5 202 aa0.95□□□□□ -2.26
CD44-217ENST00000525348 MDN1Q9NU22 5596 aa0.94□□□□□ -2.26
CD44-217ENST00000525348 SPRR2EP22531 72 aa0.94□□□□□ -2.26
CD44-217ENST00000525348 SPRR2BP35325 72 aa0.94□□□□□ -2.26
CD44-217ENST00000525348 SPRR2AP35326 72 aa0.94□□□□□ -2.26
CD44-217ENST00000525348 PRM1P04553 51 aa0.9□□□□□ -2.27
CD44-217ENST00000525348 SPRR2DP22532 72 aa0.9□□□□□ -2.27
CD44-217ENST00000525348 KRTAP19-5Q3LI72 72 aa0.89□□□□□ -2.27
CD44-217ENST00000525348 SPRR2FQ96RM1 72 aa0.89□□□□□ -2.27
CD44-217ENST00000525348 AHNAK2Q8IVF2 5795 aa0.89□□□□□ -2.27
CD44-217ENST00000525348 DSTQ03001 7570 aaKnown RBP0.85□□□□□ -2.27
CD44-217ENST00000525348 MT4P47944 62 aa0.84□□□□□ -2.27
CD44-217ENST00000525348 AHNAKQ09666 5890 aaKnown RBP0.8□□□□□ -2.28
CD44-217ENST00000525348 MT1BP07438 61 aa0.8□□□□□ -2.28
CD44-217ENST00000525348 SYNE1Q8NF91 8797 aaKnown RBP0.78□□□□□ -2.28
CD44-217ENST00000525348 MT1AP04731 61 aa0.78□□□□□ -2.28
CD44-217ENST00000525348 MUC5BQ9HC84 5762 aaPredicted RBP0.78□□□□□ -2.28
CD44-217ENST00000525348 KRTAP6-2Q3LI66 62 aa0.76□□□□□ -2.29
CD44-217ENST00000525348 KRTAP19-3Q7Z4W3 81 aa0.74□□□□□ -2.29
CD44-217ENST00000525348 SPRR2GQ9BYE4 73 aa0.74□□□□□ -2.29
CD44-217ENST00000525348 MUC5ACP98088 5654 aa0.74□□□□□ -2.29
CD44-217ENST00000525348 KRTAP19-8Q3LI54 63 aa0.72□□□□□ -2.29
CD44-217ENST00000525348 MT1XP80297 61 aa0.71□□□□□ -2.3
CD44-217ENST00000525348 MT1EP04732 61 aa0.69□□□□□ -2.3
CD44-217ENST00000525348 KRTAP21-1Q3LI58 79 aa0.68□□□□□ -2.3
CD44-217ENST00000525348 KRTAP20-2Q3LI61 65 aa0.68□□□□□ -2.3
CD44-217ENST00000525348 MT1LQ93083 61 aa0.66□□□□□ -2.3
CD44-217ENST00000525348 KRTAP19-7Q3SYF9 63 aa0.63□□□□□ -2.31
CD44-217ENST00000525348 MT1MQ8N339 61 aa0.62□□□□□ -2.31
CD44-217ENST00000525348 MT1GP13640 62 aa0.59□□□□□ -2.31
CD44-217ENST00000525348 PHGR1C9JFL3 82 aa0.54□□□□□ -2.32
CD44-217ENST00000525348 KRTAP6-1Q3LI64 71 aa0.54□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 122.4 ms