RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 KRTAP20-1Q3LI63 56 aa2.82□□□□□ -1.96
HDAC3-216ENST00000523088 KMT2DO14686 5537 aa2.8□□□□□ -1.96
HDAC3-216ENST00000523088 MDN1Q9NU22 5596 aa2.79□□□□□ -1.96
HDAC3-216ENST00000523088 MT1XP80297 61 aa2.78□□□□□ -1.96
HDAC3-216ENST00000523088 LCE1AQ5T7P2 110 aa2.78□□□□□ -1.96
HDAC3-216ENST00000523088 KRTAP8-1Q8IUC2 63 aa2.76□□□□□ -1.97
HDAC3-216ENST00000523088 SPRR2FQ96RM1 72 aa2.76□□□□□ -1.97
HDAC3-216ENST00000523088 KRTAP12-4P60329 112 aa2.75□□□□□ -1.97
HDAC3-216ENST00000523088 KRTAP4-8Q9BYQ9 185 aa2.75□□□□□ -1.97
HDAC3-216ENST00000523088 KRTAP2-3P0C7H8 128 aa2.74□□□□□ -1.97
HDAC3-216ENST00000523088 KRTAP2-4Q9BYR9 128 aa2.74□□□□□ -1.97
HDAC3-216ENST00000523088 SPRR2EP22531 72 aa2.73□□□□□ -1.97
HDAC3-216ENST00000523088 SPRR2BP35325 72 aa2.73□□□□□ -1.97
HDAC3-216ENST00000523088 SPRR2AP35326 72 aa2.73□□□□□ -1.97
HDAC3-216ENST00000523088 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
HDAC3-216ENST00000523088 KRTAP2-1Q9BYU5 128 aa2.7□□□□□ -1.98
HDAC3-216ENST00000523088 KRTAP10-12P60413 245 aa2.69□□□□□ -1.98
HDAC3-216ENST00000523088 KRTAP9-4Q9BYQ2 154 aa2.69□□□□□ -1.98
HDAC3-216ENST00000523088 SPRR2DP22532 72 aa2.65□□□□□ -1.99
HDAC3-216ENST00000523088 LCE3BQ5TA77 95 aa2.64□□□□□ -1.99
HDAC3-216ENST00000523088 KRTAP4-8A0A0G2JLE6 195 aa2.62□□□□□ -1.99
HDAC3-216ENST00000523088 KRTAP10-7P60409 375 aaPredicted RBP2.62□□□□□ -1.99
HDAC3-216ENST00000523088 LCE1EQ5T753 118 aa2.62□□□□□ -1.99
HDAC3-216ENST00000523088 KRTAP9-9Q9BYP9 154 aa2.58□□□□□ -2
HDAC3-216ENST00000523088 KRTAP4-12Q9BQ66 201 aa2.57□□□□□ -2
HDAC3-216ENST00000523088 LCE1DQ5T752 114 aa2.54□□□□□ -2
HDAC3-216ENST00000523088 LCE3AQ5TA76 89 aa2.51□□□□□ -2.01
HDAC3-216ENST00000523088 KRTAP19-3Q7Z4W3 81 aa2.49□□□□□ -2.01
HDAC3-216ENST00000523088 MT1EP04732 61 aa2.48□□□□□ -2.01
HDAC3-216ENST00000523088 KRTAP19-7Q3SYF9 63 aa2.48□□□□□ -2.01
HDAC3-216ENST00000523088 KRTAP12-3P60328 96 aa2.47□□□□□ -2.01
HDAC3-216ENST00000523088 KRTAP4-7Q9BYR0 210 aa2.46□□□□□ -2.02
HDAC3-216ENST00000523088 MT1GP13640 62 aa2.44□□□□□ -2.02
HDAC3-216ENST00000523088 DSTQ03001 7570 aaKnown RBP2.44□□□□□ -2.02
HDAC3-216ENST00000523088 LCE3CQ5T5A8 94 aa2.43□□□□□ -2.02
HDAC3-216ENST00000523088 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
HDAC3-216ENST00000523088 KRTAP19-5Q3LI72 72 aa2.4□□□□□ -2.03
HDAC3-216ENST00000523088 LCE4AQ5TA78 99 aa2.38□□□□□ -2.03
HDAC3-216ENST00000523088 KRTAP4-9Q9BYQ8 210 aa2.38□□□□□ -2.03
HDAC3-216ENST00000523088 KRTAP4-2Q9BYR5 136 aa2.37□□□□□ -2.03
HDAC3-216ENST00000523088 MT1MQ8N339 61 aa2.36□□□□□ -2.03
HDAC3-216ENST00000523088 MT1LQ93083 61 aa2.36□□□□□ -2.03
HDAC3-216ENST00000523088 HMCN1Q96RW7 5635 aa2.29□□□□□ -2.04
HDAC3-216ENST00000523088 KRTAP5-4Q6L8H1 288 aa2.29□□□□□ -2.04
HDAC3-216ENST00000523088 MT4P47944 62 aa2.28□□□□□ -2.04
HDAC3-216ENST00000523088 KRTAP4-11Q9BYQ6 195 aa2.28□□□□□ -2.04
HDAC3-216ENST00000523088 PRM1P04553 51 aa2.22□□□□□ -2.05
HDAC3-216ENST00000523088 LCE3EQ5T5B0 92 aa2.22□□□□□ -2.05
HDAC3-216ENST00000523088 KRTAP5-3Q6L8H2 238 aa2.22□□□□□ -2.05
HDAC3-216ENST00000523088 KRTAP4-3Q9BYR4 195 aa2.22□□□□□ -2.05
HDAC3-216ENST00000523088 AHNAK2Q8IVF2 5795 aa2.21□□□□□ -2.05
HDAC3-216ENST00000523088 KRTAP9-6A8MVA2 160 aa2.18□□□□□ -2.06
HDAC3-216ENST00000523088 KRTAP5-10Q6L8G5 202 aa2.18□□□□□ -2.06
HDAC3-216ENST00000523088 KRTAP5-5Q701N2 237 aaPredicted RBP2.17□□□□□ -2.06
HDAC3-216ENST00000523088 MT1AP04731 61 aa2.15□□□□□ -2.07
HDAC3-216ENST00000523088 KRTAP20-2Q3LI61 65 aa2.15□□□□□ -2.07
HDAC3-216ENST00000523088 LCE3DQ9BYE3 92 aa2.15□□□□□ -2.07
HDAC3-216ENST00000523088 KRTAP5-7Q6L8G8 165 aa2.13□□□□□ -2.07
HDAC3-216ENST00000523088 SYNE1Q8NF91 8797 aaKnown RBP2.03□□□□□ -2.08
HDAC3-216ENST00000523088 KRTAP5-2Q701N4 177 aa2□□□□□ -2.09
HDAC3-216ENST00000523088 KRTAP6-1Q3LI64 71 aa1.97□□□□□ -2.09
HDAC3-216ENST00000523088 KRTAP5-8O75690 187 aa1.9□□□□□ -2.11
HDAC3-216ENST00000523088 KRTAP6-2Q3LI66 62 aa1.9□□□□□ -2.11
HDAC3-216ENST00000523088 OBSCNQ5VST9 7968 aa1.84□□□□□ -2.11
HDAC3-216ENST00000523088 MUC5BQ9HC84 5762 aaPredicted RBP1.84□□□□□ -2.11
HDAC3-216ENST00000523088 AHNAKQ09666 5890 aaKnown RBP1.83□□□□□ -2.12
HDAC3-216ENST00000523088 MUC5ACP98088 5654 aa1.82□□□□□ -2.12
HDAC3-216ENST00000523088 KRTAP5-1Q6L8H4 278 aa1.78□□□□□ -2.12
HDAC3-216ENST00000523088 LCE1CQ5T751 118 aa1.75□□□□□ -2.13
HDAC3-216ENST00000523088 LCE1BQ5T7P3 118 aa1.75□□□□□ -2.13
HDAC3-216ENST00000523088 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
HDAC3-216ENST00000523088 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.59□□□□□ -2.15
HDAC3-216ENST00000523088 KRTAP5-11Q6L8G4 156 aa1.55□□□□□ -2.16
HDAC3-216ENST00000523088 KRTAP4-4Q9BYR3 166 aa1.37□□□□□ -2.19
HDAC3-216ENST00000523088 KRTAP21-2Q3LI59 83 aa1.3□□□□□ -2.2
HDAC3-216ENST00000523088 MUC19Q7Z5P9 8384 aa1.29□□□□□ -2.2
HDAC3-216ENST00000523088 PHGR1C9JFL3 82 aa1.28□□□□□ -2.2
HDAC3-216ENST00000523088 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 83 ms