RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-222	ENST00000520948	DST	Q03001	7570 aa	Known RBP	6.76	□□□□□ -1.33
VEGFA-222	ENST00000520948	LCE3A	Q5TA76	89 aa		6.73	□□□□□ -1.33
VEGFA-222	ENST00000520948	MT1E	P04732	61 aa		6.7	□□□□□ -1.34
VEGFA-222	ENST00000520948	KRTAP19-5	Q3LI72	72 aa		6.7	□□□□□ -1.34
VEGFA-222	ENST00000520948	KRTAP4-9	Q9BYQ8	210 aa		6.7	□□□□□ -1.34
VEGFA-222	ENST00000520948	KRTAP25-1	Q3LHN0	102 aa		6.68	□□□□□ -1.34
VEGFA-222	ENST00000520948	LCE5A	Q5TCM9	118 aa		6.62	□□□□□ -1.35
VEGFA-222	ENST00000520948	KRTAP19-3	Q7Z4W3	81 aa		6.56	□□□□□ -1.36
VEGFA-222	ENST00000520948	ROMO1	P60602	79 aa		6.53	□□□□□ -1.36
VEGFA-222	ENST00000520948	KRTAP23-1	A1A580	65 aa		6.5	□□□□□ -1.37
VEGFA-222	ENST00000520948	LCE1D	Q5T752	114 aa		6.48	□□□□□ -1.37
VEGFA-222	ENST00000520948	MT1G	P13640	62 aa		6.47	□□□□□ -1.37
VEGFA-222	ENST00000520948	KRTAP12-3	P60328	96 aa		6.47	□□□□□ -1.37
VEGFA-222	ENST00000520948	MT1L	Q93083	61 aa		6.47	□□□□□ -1.37
VEGFA-222	ENST00000520948	MT4	P47944	62 aa		6.39	□□□□□ -1.39
VEGFA-222	ENST00000520948	PMAIP1	Q13794	54 aa		6.38	□□□□□ -1.39
VEGFA-222	ENST00000520948	BRK1	Q8WUW1	75 aa		6.38	□□□□□ -1.39
VEGFA-222	ENST00000520948	PP632	Q6XCG6	107 aa		6.35	□□□□□ -1.39
VEGFA-222	ENST00000520948	MT1M	Q8N339	61 aa		6.35	□□□□□ -1.39
VEGFA-222	ENST00000520948	HMCN1	Q96RW7	5635 aa		6.32	□□□□□ -1.4
VEGFA-222	ENST00000520948	LCE4A	Q5TA78	99 aa		6.32	□□□□□ -1.4
VEGFA-222	ENST00000520948	AHNAK2	Q8IVF2	5795 aa		6.26	□□□□□ -1.41
VEGFA-222	ENST00000520948	KRTAP15-1	Q3LI76	137 aa		6.19	□□□□□ -1.42
VEGFA-222	ENST00000520948	KRTAP4-3	Q9BYR4	195 aa		6.19	□□□□□ -1.42
VEGFA-222	ENST00000520948	KRTAP19-4	Q3LI73	84 aa		6.18	□□□□□ -1.42
VEGFA-222	ENST00000520948	KRTAP4-7	Q9BYR0	210 aa		6.18	□□□□□ -1.42
VEGFA-222	ENST00000520948	KRTAP5-10	Q6L8G5	202 aa		6.17	□□□□□ -1.42
VEGFA-222	ENST00000520948	KRTAP5-4	Q6L8H1	288 aa		6.15	□□□□□ -1.42
VEGFA-222	ENST00000520948	KTN1-AS1	Q86SY8	53 aa		6.15	□□□□□ -1.42
VEGFA-222	ENST00000520948	KRTAP4-6	Q9BYQ5	205 aa		6.15	□□□□□ -1.42
VEGFA-222	ENST00000520948	LCE3C	Q5T5A8	94 aa		6.01	□□□□□ -1.45
VEGFA-222	ENST00000520948	KRTAP5-7	Q6L8G8	165 aa		5.96	□□□□□ -1.46
VEGFA-222	ENST00000520948	KRTAP5-3	Q6L8H2	238 aa		5.95	□□□□□ -1.46
VEGFA-222	ENST00000520948	KRTAP20-2	Q3LI61	65 aa		5.85	□□□□□ -1.47
VEGFA-222	ENST00000520948	LOC100996750	A0A140TA64	210 aa		5.83	□□□□□ -1.48
VEGFA-222	ENST00000520948	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.82	□□□□□ -1.48
VEGFA-222	ENST00000520948	SPRR5	A0A1B0GTR4	108 aa		5.74	□□□□□ -1.49
VEGFA-222	ENST00000520948	PRAC1	Q96KF2	57 aa		5.73	□□□□□ -1.49
VEGFA-222	ENST00000520948	KRTAP9-6	A8MVA2	160 aa		5.7	□□□□□ -1.5
VEGFA-222	ENST00000520948		H3BS24	57 aa		5.69	□□□□□ -1.5
VEGFA-222	ENST00000520948	KRTAP12-4	P60329	112 aa		5.69	□□□□□ -1.5
VEGFA-222	ENST00000520948	SYNE1	Q8NF91	8797 aa	Known RBP	5.59	□□□□□ -1.51
VEGFA-222	ENST00000520948	MT1A	P04731	61 aa		5.51	□□□□□ -1.53
VEGFA-222	ENST00000520948	KRTAP6-1	Q3LI64	71 aa		5.46	□□□□□ -1.54
VEGFA-222	ENST00000520948	KRTAP4-11	Q9BYQ6	195 aa		5.42	□□□□□ -1.54
VEGFA-222	ENST00000520948	KRTAP5-2	Q701N4	177 aa		5.33	□□□□□ -1.56
VEGFA-222	ENST00000520948	KRTAP9-4	Q9BYQ2	154 aa		5.3	□□□□□ -1.56
VEGFA-222	ENST00000520948	KRTAP5-8	O75690	187 aa		5.25	□□□□□ -1.57
VEGFA-222	ENST00000520948	MUC5AC	P98088	5654 aa		5.22	□□□□□ -1.57
VEGFA-222	ENST00000520948	AHNAK	Q09666	5890 aa	Known RBP	5.21	□□□□□ -1.57
VEGFA-222	ENST00000520948	MUC5B	Q9HC84	5762 aa	Predicted RBP	5.14	□□□□□ -1.59
VEGFA-222	ENST00000520948	KRTAP6-2	Q3LI66	62 aa		5.12	□□□□□ -1.59
VEGFA-222	ENST00000520948	OBSCN	Q5VST9	7968 aa		5.1	□□□□□ -1.59
VEGFA-222	ENST00000520948	KRTAP9-9	Q9BYP9	154 aa		5.03	□□□□□ -1.6
VEGFA-222	ENST00000520948	MT3	P25713	68 aa		5.01	□□□□□ -1.61
VEGFA-222	ENST00000520948		A0A0A0MQY5	61 aa		4.97	□□□□□ -1.61
VEGFA-222	ENST00000520948	NDUFAF8	A1L188	74 aa		4.86	□□□□□ -1.63
VEGFA-222	ENST00000520948	KRTAP5-1	Q6L8H4	278 aa		4.85	□□□□□ -1.63
VEGFA-222	ENST00000520948	LUZP6	Q538Z0	58 aa		4.76	□□□□□ -1.65
VEGFA-222	ENST00000520948	LCE1E	Q5T753	118 aa		4.54	□□□□□ -1.68
VEGFA-222	ENST00000520948	LCE3D	Q9BYE3	92 aa		4.4	□□□□□ -1.71
VEGFA-222	ENST00000520948	LCE1B	Q5T7P3	118 aa		4.33	□□□□□ -1.72
VEGFA-222	ENST00000520948	KRTAP4-2	Q9BYR5	136 aa		4.31	□□□□□ -1.72
VEGFA-222	ENST00000520948	INE1	O15225	51 aa		4.25	□□□□□ -1.73
VEGFA-222	ENST00000520948	LCE3E	Q5T5B0	92 aa		4.21	□□□□□ -1.74
VEGFA-222	ENST00000520948	LCE1C	Q5T751	118 aa		4.21	□□□□□ -1.74
VEGFA-222	ENST00000520948	KRTAP4-12	Q9BQ66	201 aa		4.17	□□□□□ -1.74
VEGFA-222	ENST00000520948	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.9	□□□□□ -1.79
VEGFA-222	ENST00000520948	KRTAP5-11	Q6L8G4	156 aa		3.81	□□□□□ -1.8
VEGFA-222	ENST00000520948	LCE1F	Q5T754	118 aa		3.76	□□□□□ -1.81
VEGFA-222	ENST00000520948	PHGR1	C9JFL3	82 aa		3.63	□□□□□ -1.83
VEGFA-222	ENST00000520948	KRTAP21-2	Q3LI59	83 aa		3.62	□□□□□ -1.83
VEGFA-222	ENST00000520948	PRM1	P04553	51 aa		3.35	□□□□□ -1.87
VEGFA-222	ENST00000520948	KRTAP4-4	Q9BYR3	166 aa		3.29	□□□□□ -1.88
VEGFA-222	ENST00000520948	MUC19	Q7Z5P9	8384 aa		3.18	□□□□□ -1.9
VEGFA-222	ENST00000520948	KRTAP21-1	Q3LI58	79 aa		2.73	□□□□□ -1.97
VEGFA-222	ENST00000520948	MUC16	Q8WXI7	14507 aa		2.16	□□□□□ -2.06

Retrieved 77 of 20,778 RNA–protein pairs in 575.7 ms