RNA–Protein interactions for RNA: ENST00000520233.1

SDC2-205, Transcript of syndecan 2, humanhuman

TSL 4

Gene SDC2, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-205ENST00000520233 LCE1AQ5T7P2 110 aa6.5□□□□□ -1.37
SDC2-205ENST00000520233 KRTAP12-3P60328 96 aa6.49□□□□□ -1.37
SDC2-205ENST00000520233 KRTAP20-1Q3LI63 56 aa6.49□□□□□ -1.37
SDC2-205ENST00000520233 MDN1Q9NU22 5596 aa6.42□□□□□ -1.38
SDC2-205ENST00000520233 KRTAP19-3Q7Z4W3 81 aa6.4□□□□□ -1.38
SDC2-205ENST00000520233 KRTAP2-3P0C7H8 128 aa6.38□□□□□ -1.39
SDC2-205ENST00000520233 KRTAP2-4Q9BYR9 128 aa6.38□□□□□ -1.39
SDC2-205ENST00000520233 MT1LQ93083 61 aa6.37□□□□□ -1.39
SDC2-205ENST00000520233 LCE5AQ5TCM9 118 aa6.33□□□□□ -1.4
SDC2-205ENST00000520233 MT1GP13640 62 aa6.31□□□□□ -1.4
SDC2-205ENST00000520233 SPRR2DP22532 72 aa6.28□□□□□ -1.4
SDC2-205ENST00000520233 KRTAP15-1Q3LI76 137 aa6.26□□□□□ -1.41
SDC2-205ENST00000520233 PRAC1Q96KF2 57 aa6.22□□□□□ -1.41
SDC2-205ENST00000520233 KTN1-AS1Q86SY8 53 aa6.2□□□□□ -1.42
SDC2-205ENST00000520233 MT1MQ8N339 61 aa6.2□□□□□ -1.42
SDC2-205ENST00000520233 KRTAP19-4Q3LI73 84 aa6.19□□□□□ -1.42
SDC2-205ENST00000520233 KRTAP2-2Q9BYT5 123 aa6.19□□□□□ -1.42
SDC2-205ENST00000520233 KRTAP2-1Q9BYU5 128 aa6.19□□□□□ -1.42
SDC2-205ENST00000520233 LCE3BQ5TA77 95 aa6.09□□□□□ -1.43
SDC2-205ENST00000520233 KRTAP4-7Q9BYR0 210 aa6.07□□□□□ -1.44
SDC2-205ENST00000520233 LCE3CQ5T5A8 94 aa6.04□□□□□ -1.44
SDC2-205ENST00000520233 KRTAP4-3Q9BYR4 195 aa6.03□□□□□ -1.44
SDC2-205ENST00000520233 DSTQ03001 7570 aaKnown RBP5.84□□□□□ -1.47
SDC2-205ENST00000520233 LOC100996750A0A140TA64 210 aa5.72□□□□□ -1.49
SDC2-205ENST00000520233 KRTAP9-6A8MVA2 160 aa5.67□□□□□ -1.5
SDC2-205ENST00000520233 KRTAP5-5Q701N2 237 aaPredicted RBP5.64□□□□□ -1.51
SDC2-205ENST00000520233 KRTAP4-9Q9BYQ8 210 aa5.62□□□□□ -1.51
SDC2-205ENST00000520233 LCE4AQ5TA78 99 aa5.61□□□□□ -1.51
SDC2-205ENST00000520233 KRTAP5-4Q6L8H1 288 aa5.6□□□□□ -1.51
SDC2-205ENST00000520233 SPRR5A0A1B0GTR4 108 aa5.59□□□□□ -1.51
SDC2-205ENST00000520233 LCE1DQ5T752 114 aa5.48□□□□□ -1.53
SDC2-205ENST00000520233 MT4P47944 62 aa5.47□□□□□ -1.53
SDC2-205ENST00000520233 MT1AP04731 61 aa5.43□□□□□ -1.54
SDC2-205ENST00000520233 KRTAP4-6Q9BYQ5 205 aa5.36□□□□□ -1.55
SDC2-205ENST00000520233 KRTAP12-4P60329 112 aa5.35□□□□□ -1.55
SDC2-205ENST00000520233 KRTAP6-1Q3LI64 71 aa5.35□□□□□ -1.55
SDC2-205ENST00000520233 H3BS24 57 aa5.33□□□□□ -1.56
SDC2-205ENST00000520233 SYNE1Q8NF91 8797 aaKnown RBP5.24□□□□□ -1.57
SDC2-205ENST00000520233 KRTAP20-2Q3LI61 65 aa5.24□□□□□ -1.57
SDC2-205ENST00000520233 HMCN1Q96RW7 5635 aa5.23□□□□□ -1.57
SDC2-205ENST00000520233 KRTAP9-4Q9BYQ2 154 aa5.19□□□□□ -1.58
SDC2-205ENST00000520233 LUZP6Q538Z0 58 aa5.17□□□□□ -1.58
SDC2-205ENST00000520233 GPR98Q8WXG9 6306 aa5.15□□□□□ -1.59
SDC2-205ENST00000520233 KRTAP5-3Q6L8H2 238 aa5.08□□□□□ -1.6
SDC2-205ENST00000520233 KRTAP5-10Q6L8G5 202 aa5.02□□□□□ -1.61
SDC2-205ENST00000520233 KRTAP6-2Q3LI66 62 aa5□□□□□ -1.61
SDC2-205ENST00000520233 KRTAP5-2Q701N4 177 aa5□□□□□ -1.61
SDC2-205ENST00000520233 MT3P25713 68 aa4.94□□□□□ -1.62
SDC2-205ENST00000520233 AHNAK2Q8IVF2 5795 aa4.93□□□□□ -1.62
SDC2-205ENST00000520233 KRTAP5-7Q6L8G8 165 aa4.82□□□□□ -1.64
SDC2-205ENST00000520233 KRTAP4-12Q9BQ66 201 aa4.73□□□□□ -1.65
SDC2-205ENST00000520233 NDUFAF8A1L188 74 aa4.71□□□□□ -1.66
SDC2-205ENST00000520233 KRTAP4-11Q9BYQ6 195 aa4.67□□□□□ -1.66
SDC2-205ENST00000520233 KRTAP5-8O75690 187 aa4.48□□□□□ -1.69
SDC2-205ENST00000520233 KRTAP9-9Q9BYP9 154 aa4.48□□□□□ -1.69
SDC2-205ENST00000520233 LCE3DQ9BYE3 92 aa4.46□□□□□ -1.7
SDC2-205ENST00000520233 OBSCNQ5VST9 7968 aa4.42□□□□□ -1.7
SDC2-205ENST00000520233 LCE1EQ5T753 118 aa4.41□□□□□ -1.7
SDC2-205ENST00000520233 KRTAP5-1Q6L8H4 278 aa4.38□□□□□ -1.71
SDC2-205ENST00000520233 LCE3EQ5T5B0 92 aa4.3□□□□□ -1.72
SDC2-205ENST00000520233 MUC5ACP98088 5654 aa4.12□□□□□ -1.75
SDC2-205ENST00000520233 KRTAP4-2Q9BYR5 136 aa4.11□□□□□ -1.75
SDC2-205ENST00000520233 LCE1CQ5T751 118 aa4.09□□□□□ -1.75
SDC2-205ENST00000520233 LCE1BQ5T7P3 118 aa4.09□□□□□ -1.75
SDC2-205ENST00000520233 MUC5BQ9HC84 5762 aaPredicted RBP4.06□□□□□ -1.76
SDC2-205ENST00000520233 A0A0A0MQY5 61 aa4.04□□□□□ -1.76
SDC2-205ENST00000520233 AHNAKQ09666 5890 aaKnown RBP3.99□□□□□ -1.77
SDC2-205ENST00000520233 INE1O15225 51 aa3.91□□□□□ -1.78
SDC2-205ENST00000520233 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.79□□□□□ -1.8
SDC2-205ENST00000520233 KRTAP5-11Q6L8G4 156 aa3.65□□□□□ -1.83
SDC2-205ENST00000520233 KRTAP21-2Q3LI59 83 aa3.53□□□□□ -1.84
SDC2-205ENST00000520233 PRM1P04553 51 aa3.52□□□□□ -1.85
SDC2-205ENST00000520233 LCE1FQ5T754 118 aa3.42□□□□□ -1.86
SDC2-205ENST00000520233 PHGR1C9JFL3 82 aa3.13□□□□□ -1.91
SDC2-205ENST00000520233 KRTAP4-4Q9BYR3 166 aa3.13□□□□□ -1.91
SDC2-205ENST00000520233 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
SDC2-205ENST00000520233 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
SDC2-205ENST00000520233 MUC16Q8WXI7 14507 aa1.98□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 12.7 ms