RNA–Protein interactions for RNA: ENST00000517490.5

CPNE3-203, Transcript of copine 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE3, Length 4,865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-203ENST00000517490 RNF213Q63HN8 5207 aa2.22□□□□□ -2.05
CPNE3-203ENST00000517490 FAT4Q6V0I7 4981 aa2.22□□□□□ -2.05
CPNE3-203ENST00000517490 MT1LQ93083 61 aa2.22□□□□□ -2.05
CPNE3-203ENST00000517490 KRTAP12-4P60329 112 aa2.22□□□□□ -2.05
CPNE3-203ENST00000517490 KRTAP4-7Q9BYR0 210 aa2.22□□□□□ -2.05
CPNE3-203ENST00000517490 MT1EP04732 61 aa2.19□□□□□ -2.06
CPNE3-203ENST00000517490 MT1GP13640 62 aa2.18□□□□□ -2.06
CPNE3-203ENST00000517490 KRTAP20-1Q3LI63 56 aa2.17□□□□□ -2.06
CPNE3-203ENST00000517490 KRTAP19-7Q3SYF9 63 aa2.17□□□□□ -2.06
CPNE3-203ENST00000517490 GPR98Q8WXG9 6306 aa2.17□□□□□ -2.06
CPNE3-203ENST00000517490 KRTAP9-6A8MVA2 160 aa2.17□□□□□ -2.06
CPNE3-203ENST00000517490 LCE3BQ5TA77 95 aa2.14□□□□□ -2.07
CPNE3-203ENST00000517490 UBR4Q5T4S7 5183 aa2.13□□□□□ -2.07
CPNE3-203ENST00000517490 KRTAP6-3Q3LI67 103 aa2.13□□□□□ -2.07
CPNE3-203ENST00000517490 LCE1FQ5T754 118 aa2.12□□□□□ -2.07
CPNE3-203ENST00000517490 KRTAP19-3Q7Z4W3 81 aa2.1□□□□□ -2.07
CPNE3-203ENST00000517490 SPRR2EP22531 72 aa2.1□□□□□ -2.07
CPNE3-203ENST00000517490 SPRR2BP35325 72 aa2.1□□□□□ -2.07
CPNE3-203ENST00000517490 SPRR2AP35326 72 aa2.1□□□□□ -2.07
CPNE3-203ENST00000517490 SYNE1Q8NF91 8797 aaKnown RBP2.09□□□□□ -2.07
CPNE3-203ENST00000517490 LCE3EQ5T5B0 92 aa2.09□□□□□ -2.08
CPNE3-203ENST00000517490 MT1MQ8N339 61 aa2.07□□□□□ -2.08
CPNE3-203ENST00000517490 LCE3DQ9BYE3 92 aa2.06□□□□□ -2.08
CPNE3-203ENST00000517490 LCE1AQ5T7P2 110 aa2.06□□□□□ -2.08
CPNE3-203ENST00000517490 SPRR2DP22532 72 aa2.05□□□□□ -2.08
CPNE3-203ENST00000517490 KRTAP4-3Q9BYR4 195 aa2.04□□□□□ -2.08
CPNE3-203ENST00000517490 KRTAP9-1A8MXZ3 250 aaPredicted RBP2□□□□□ -2.09
CPNE3-203ENST00000517490 KRTAP2-2Q9BYT5 123 aa1.99□□□□□ -2.09
CPNE3-203ENST00000517490 KRTAP5-9P26371 169 aa1.97□□□□□ -2.09
CPNE3-203ENST00000517490 PRM1P04553 51 aa1.96□□□□□ -2.1
CPNE3-203ENST00000517490 MT1AP04731 61 aa1.95□□□□□ -2.1
CPNE3-203ENST00000517490 LCE1EQ5T753 118 aa1.94□□□□□ -2.1
CPNE3-203ENST00000517490 KMT2DO14686 5537 aa1.93□□□□□ -2.1
CPNE3-203ENST00000517490 USH2AO75445 5202 aa1.92□□□□□ -2.1
CPNE3-203ENST00000517490 KRTAP9-9Q9BYP9 154 aa1.92□□□□□ -2.1
CPNE3-203ENST00000517490 KRTAP4-9Q9BYQ8 210 aa1.92□□□□□ -2.1
CPNE3-203ENST00000517490 KRTAP4-12Q9BQ66 201 aa1.91□□□□□ -2.1
CPNE3-203ENST00000517490 OBSCNQ5VST9 7968 aa1.87□□□□□ -2.11
CPNE3-203ENST00000517490 KRTAP6-1Q3LI64 71 aa1.86□□□□□ -2.11
CPNE3-203ENST00000517490 KRTAP4-2Q9BYR5 136 aa1.83□□□□□ -2.12
CPNE3-203ENST00000517490 LCE1BQ5T7P3 118 aa1.82□□□□□ -2.12
CPNE3-203ENST00000517490 FSIP2Q5CZC0 6907 aa1.81□□□□□ -2.12
CPNE3-203ENST00000517490 LCE1DQ5T752 114 aa1.81□□□□□ -2.12
CPNE3-203ENST00000517490 SSPOA2VEC9 5147 aa1.81□□□□□ -2.12
CPNE3-203ENST00000517490 NEBP20929 6669 aa1.8□□□□□ -2.12
CPNE3-203ENST00000517490 KRTAP6-2Q3LI66 62 aa1.8□□□□□ -2.12
CPNE3-203ENST00000517490 MT4P47944 62 aa1.78□□□□□ -2.12
CPNE3-203ENST00000517490 FCGBPQ9Y6R7 5405 aaPredicted RBP1.77□□□□□ -2.13
CPNE3-203ENST00000517490 KRTAP5-3Q6L8H2 238 aa1.77□□□□□ -2.13
CPNE3-203ENST00000517490 MUC12Q9UKN1 5478 aa1.72□□□□□ -2.13
CPNE3-203ENST00000517490 SYNE2Q8WXH0 6885 aaKnown RBP1.72□□□□□ -2.13
CPNE3-203ENST00000517490 DSTQ03001 7570 aaKnown RBP1.71□□□□□ -2.14
CPNE3-203ENST00000517490 KRTAP5-5Q701N2 237 aaPredicted RBP1.7□□□□□ -2.14
CPNE3-203ENST00000517490 MACF1Q9UPN3 7388 aaKnown RBP1.69□□□□□ -2.14
CPNE3-203ENST00000517490 AHNAKQ09666 5890 aaKnown RBP1.68□□□□□ -2.14
CPNE3-203ENST00000517490 LCE1CQ5T751 118 aa1.65□□□□□ -2.14
CPNE3-203ENST00000517490 HMCN1Q96RW7 5635 aa1.65□□□□□ -2.15
CPNE3-203ENST00000517490 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.63□□□□□ -2.15
CPNE3-203ENST00000517490 KRTAP5-4Q6L8H1 288 aa1.62□□□□□ -2.15
CPNE3-203ENST00000517490 MUC5BQ9HC84 5762 aaPredicted RBP1.62□□□□□ -2.15
CPNE3-203ENST00000517490 KRTAP4-11Q9BYQ6 195 aa1.6□□□□□ -2.15
CPNE3-203ENST00000517490 MUC19Q7Z5P9 8384 aa1.59□□□□□ -2.15
CPNE3-203ENST00000517490 KRTAP5-7Q6L8G8 165 aa1.53□□□□□ -2.16
CPNE3-203ENST00000517490 KRTAP5-2Q701N4 177 aa1.52□□□□□ -2.17
CPNE3-203ENST00000517490 KRTAP20-2Q3LI61 65 aa1.49□□□□□ -2.17
CPNE3-203ENST00000517490 MDN1Q9NU22 5596 aa1.45□□□□□ -2.18
CPNE3-203ENST00000517490 AHNAK2Q8IVF2 5795 aa1.42□□□□□ -2.18
CPNE3-203ENST00000517490 KRTAP5-8O75690 187 aa1.35□□□□□ -2.19
CPNE3-203ENST00000517490 KRTAP5-10Q6L8G5 202 aa1.31□□□□□ -2.2
CPNE3-203ENST00000517490 MUC5ACP98088 5654 aa1.27□□□□□ -2.21
CPNE3-203ENST00000517490 KRTAP5-1Q6L8H4 278 aa1.23□□□□□ -2.21
CPNE3-203ENST00000517490 KRTAP4-4Q9BYR3 166 aa1.18□□□□□ -2.22
CPNE3-203ENST00000517490 KRTAP5-11Q6L8G4 156 aa1.13□□□□□ -2.23
CPNE3-203ENST00000517490 KRTAP21-2Q3LI59 83 aa1.1□□□□□ -2.23
CPNE3-203ENST00000517490 KRTAP21-1Q3LI58 79 aa1.1□□□□□ -2.23
CPNE3-203ENST00000517490 PHGR1C9JFL3 82 aa1.03□□□□□ -2.24
CPNE3-203ENST00000517490 MUC16Q8WXI7 14507 aa0.69□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 79.3 ms