RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 KRTAP2-4Q9BYR9 128 aa2.75□□□□□ -1.97
NIPBL-208ENST00000514335 FLGP20930 4061 aaPredicted RBP2.74□□□□□ -1.97
NIPBL-208ENST00000514335 TNP1P09430 55 aa2.71□□□□□ -1.98
NIPBL-208ENST00000514335 LCE3CQ5T5A8 94 aa2.71□□□□□ -1.98
NIPBL-208ENST00000514335 KRTAP5-9P26371 169 aa2.7□□□□□ -1.98
NIPBL-208ENST00000514335 KRTAP4-1Q9BYQ7 146 aa2.67□□□□□ -1.98
NIPBL-208ENST00000514335 USH2AO75445 5202 aa2.66□□□□□ -1.98
NIPBL-208ENST00000514335 NEBP20929 6669 aa2.66□□□□□ -1.98
NIPBL-208ENST00000514335 FCGBPQ9Y6R7 5405 aaPredicted RBP2.65□□□□□ -1.98
NIPBL-208ENST00000514335 KRTAP12-4P60329 112 aa2.65□□□□□ -1.99
NIPBL-208ENST00000514335 SYNE2Q8WXH0 6885 aaKnown RBP2.62□□□□□ -1.99
NIPBL-208ENST00000514335 M0R2T5 61 aa2.61□□□□□ -1.99
NIPBL-208ENST00000514335 MACF1Q9UPN3 7388 aaKnown RBP2.61□□□□□ -1.99
NIPBL-208ENST00000514335 KRTAP2-1Q9BYU5 128 aa2.6□□□□□ -1.99
NIPBL-208ENST00000514335 KRTAP10-12P60413 245 aa2.59□□□□□ -1.99
NIPBL-208ENST00000514335 MT2AP02795 61 aa2.57□□□□□ -2
NIPBL-208ENST00000514335 KRTAP10-5P60370 271 aa2.57□□□□□ -2
NIPBL-208ENST00000514335 HMCN1Q96RW7 5635 aa2.55□□□□□ -2
NIPBL-208ENST00000514335 LCE3EQ5T5B0 92 aa2.55□□□□□ -2
NIPBL-208ENST00000514335 GPR98Q8WXG9 6306 aa2.54□□□□□ -2
NIPBL-208ENST00000514335 KRTAP19-8Q3LI54 63 aa2.51□□□□□ -2.01
NIPBL-208ENST00000514335 LCE3AQ5TA76 89 aa2.5□□□□□ -2.01
NIPBL-208ENST00000514335 KRTAP10-7P60409 375 aaPredicted RBP2.49□□□□□ -2.01
NIPBL-208ENST00000514335 MT1FP04733 61 aa2.46□□□□□ -2.02
NIPBL-208ENST00000514335 KRTAP5-7Q6L8G8 165 aa2.45□□□□□ -2.02
NIPBL-208ENST00000514335 LCE3DQ9BYE3 92 aa2.42□□□□□ -2.02
NIPBL-208ENST00000514335 SPRR2GQ9BYE4 73 aa2.41□□□□□ -2.02
NIPBL-208ENST00000514335 MT3P25713 68 aa2.41□□□□□ -2.02
NIPBL-208ENST00000514335 KRTAP8-1Q8IUC2 63 aa2.4□□□□□ -2.03
NIPBL-208ENST00000514335 MUC12Q9UKN1 5478 aa2.38□□□□□ -2.03
NIPBL-208ENST00000514335 MUC5BQ9HC84 5762 aaPredicted RBP2.36□□□□□ -2.03
NIPBL-208ENST00000514335 KMT2DO14686 5537 aa2.33□□□□□ -2.04
NIPBL-208ENST00000514335 KRTAP12-3P60328 96 aa2.31□□□□□ -2.04
NIPBL-208ENST00000514335 AHNAKQ09666 5890 aaKnown RBP2.31□□□□□ -2.04
NIPBL-208ENST00000514335 KRTAP9-6A8MVA2 160 aa2.3□□□□□ -2.04
NIPBL-208ENST00000514335 KRTAP5-10Q6L8G5 202 aa2.3□□□□□ -2.04
NIPBL-208ENST00000514335 MT1BP07438 61 aa2.29□□□□□ -2.04
NIPBL-208ENST00000514335 SPRR2EP22531 72 aa2.28□□□□□ -2.04
NIPBL-208ENST00000514335 SPRR2BP35325 72 aa2.28□□□□□ -2.04
NIPBL-208ENST00000514335 SPRR2AP35326 72 aa2.28□□□□□ -2.04
NIPBL-208ENST00000514335 PRM1P04553 51 aa2.28□□□□□ -2.05
NIPBL-208ENST00000514335 MDN1Q9NU22 5596 aa2.26□□□□□ -2.05
NIPBL-208ENST00000514335 SPRR2DP22532 72 aa2.22□□□□□ -2.05
NIPBL-208ENST00000514335 AHNAK2Q8IVF2 5795 aa2.18□□□□□ -2.06
NIPBL-208ENST00000514335 SPRR2FQ96RM1 72 aa2.17□□□□□ -2.06
NIPBL-208ENST00000514335 KRTAP5-4Q6L8H1 288 aa2.16□□□□□ -2.06
NIPBL-208ENST00000514335 OBSCNQ5VST9 7968 aa2.16□□□□□ -2.06
NIPBL-208ENST00000514335 SYNE1Q8NF91 8797 aaKnown RBP2.15□□□□□ -2.06
NIPBL-208ENST00000514335 KRTAP5-5Q701N2 237 aaPredicted RBP2.1□□□□□ -2.07
NIPBL-208ENST00000514335 MUC19Q7Z5P9 8384 aa2.09□□□□□ -2.07
NIPBL-208ENST00000514335 KRTAP19-5Q3LI72 72 aa2.09□□□□□ -2.07
NIPBL-208ENST00000514335 MT1XP80297 61 aa2.06□□□□□ -2.08
NIPBL-208ENST00000514335 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.06□□□□□ -2.08
NIPBL-208ENST00000514335 MT1GP13640 62 aa1.99□□□□□ -2.09
NIPBL-208ENST00000514335 KRTAP19-3Q7Z4W3 81 aa1.97□□□□□ -2.09
NIPBL-208ENST00000514335 DSTQ03001 7570 aaKnown RBP1.96□□□□□ -2.1
NIPBL-208ENST00000514335 MT4P47944 62 aa1.94□□□□□ -2.1
NIPBL-208ENST00000514335 MT1EP04732 61 aa1.9□□□□□ -2.1
NIPBL-208ENST00000514335 KRTAP6-2Q3LI66 62 aa1.9□□□□□ -2.1
NIPBL-208ENST00000514335 MUC5ACP98088 5654 aa1.89□□□□□ -2.11
NIPBL-208ENST00000514335 KRTAP5-11Q6L8G4 156 aa1.88□□□□□ -2.11
NIPBL-208ENST00000514335 LCE1CQ5T751 118 aa1.88□□□□□ -2.11
NIPBL-208ENST00000514335 LCE1BQ5T7P3 118 aa1.88□□□□□ -2.11
NIPBL-208ENST00000514335 KRTAP5-2Q701N4 177 aa1.87□□□□□ -2.11
NIPBL-208ENST00000514335 MT1MQ8N339 61 aa1.86□□□□□ -2.11
NIPBL-208ENST00000514335 KRTAP19-7Q3SYF9 63 aa1.85□□□□□ -2.11
NIPBL-208ENST00000514335 KRTAP20-2Q3LI61 65 aa1.84□□□□□ -2.11
NIPBL-208ENST00000514335 KRTAP5-8O75690 187 aa1.83□□□□□ -2.12
NIPBL-208ENST00000514335 MT1AP04731 61 aa1.8□□□□□ -2.12
NIPBL-208ENST00000514335 MT1LQ93083 61 aa1.76□□□□□ -2.13
NIPBL-208ENST00000514335 KRTAP5-1Q6L8H4 278 aa1.73□□□□□ -2.13
NIPBL-208ENST00000514335 KRTAP4-4Q9BYR3 166 aa1.58□□□□□ -2.16
NIPBL-208ENST00000514335 KRTAP4-3Q9BYR4 195 aa1.57□□□□□ -2.16
NIPBL-208ENST00000514335 KRTAP21-1Q3LI58 79 aa1.51□□□□□ -2.17
NIPBL-208ENST00000514335 KRTAP6-1Q3LI64 71 aa1.43□□□□□ -2.18
NIPBL-208ENST00000514335 PHGR1C9JFL3 82 aa1.29□□□□□ -2.2
NIPBL-208ENST00000514335 KRTAP21-2Q3LI59 83 aa1.05□□□□□ -2.24
NIPBL-208ENST00000514335 MUC16Q8WXI7 14507 aa0.87□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 13.1 ms