RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 MT1GP13640 62 aa3.8□□□□□ -1.8
TCOF1-211ENST00000513346 SYNE2Q8WXH0 6885 aaKnown RBP3.78□□□□□ -1.8
TCOF1-211ENST00000513346 USH2AO75445 5202 aa3.78□□□□□ -1.8
TCOF1-211ENST00000513346 OBSCNQ5VST9 7968 aa3.76□□□□□ -1.81
TCOF1-211ENST00000513346 LCE3BQ5TA77 95 aa3.72□□□□□ -1.81
TCOF1-211ENST00000513346 KRTAP4-7Q9BYR0 210 aa3.69□□□□□ -1.82
TCOF1-211ENST00000513346 KRTAP19-3Q7Z4W3 81 aa3.66□□□□□ -1.82
TCOF1-211ENST00000513346 KMT2DO14686 5537 aa3.64□□□□□ -1.83
TCOF1-211ENST00000513346 MT1LQ93083 61 aa3.63□□□□□ -1.83
TCOF1-211ENST00000513346 DSTQ03001 7570 aaKnown RBP3.63□□□□□ -1.83
TCOF1-211ENST00000513346 MT1EP04732 61 aa3.63□□□□□ -1.83
TCOF1-211ENST00000513346 KRTAP9-7A8MTY7 169 aa3.62□□□□□ -1.83
TCOF1-211ENST00000513346 LCE3DQ9BYE3 92 aa3.62□□□□□ -1.83
TCOF1-211ENST00000513346 KRTAP2-3P0C7H8 128 aa3.61□□□□□ -1.83
TCOF1-211ENST00000513346 KRTAP2-4Q9BYR9 128 aa3.61□□□□□ -1.83
TCOF1-211ENST00000513346 KRTAP2-1Q9BYU5 128 aa3.61□□□□□ -1.83
TCOF1-211ENST00000513346 LCE3EQ5T5B0 92 aa3.6□□□□□ -1.83
TCOF1-211ENST00000513346 FCGBPQ9Y6R7 5405 aaPredicted RBP3.53□□□□□ -1.84
TCOF1-211ENST00000513346 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.53□□□□□ -1.84
TCOF1-211ENST00000513346 KRTAP6-3Q3LI67 103 aa3.52□□□□□ -1.85
TCOF1-211ENST00000513346 KRTAP19-7Q3SYF9 63 aa3.5□□□□□ -1.85
TCOF1-211ENST00000513346 MACF1Q9UPN3 7388 aaKnown RBP3.49□□□□□ -1.85
TCOF1-211ENST00000513346 MT1MQ8N339 61 aa3.49□□□□□ -1.85
TCOF1-211ENST00000513346 KRTAP4-3Q9BYR4 195 aa3.46□□□□□ -1.86
TCOF1-211ENST00000513346 KRTAP20-1Q3LI63 56 aa3.46□□□□□ -1.86
TCOF1-211ENST00000513346 KRTAP9-6A8MVA2 160 aa3.45□□□□□ -1.86
TCOF1-211ENST00000513346 MT4P47944 62 aa3.45□□□□□ -1.86
TCOF1-211ENST00000513346 PRM1P04553 51 aa3.45□□□□□ -1.86
TCOF1-211ENST00000513346 SSPOA2VEC9 5147 aa3.44□□□□□ -1.86
TCOF1-211ENST00000513346 LOC100996750A0A140TA64 210 aa3.43□□□□□ -1.86
TCOF1-211ENST00000513346 LCE1AQ5T7P2 110 aa3.43□□□□□ -1.86
TCOF1-211ENST00000513346 MUC12Q9UKN1 5478 aa3.37□□□□□ -1.87
TCOF1-211ENST00000513346 MT3P25713 68 aa3.34□□□□□ -1.88
TCOF1-211ENST00000513346 MDN1Q9NU22 5596 aa3.28□□□□□ -1.88
TCOF1-211ENST00000513346 KRTAP2-2Q9BYT5 123 aa3.27□□□□□ -1.89
TCOF1-211ENST00000513346 KRTAP4-9Q9BYQ8 210 aa3.26□□□□□ -1.89
TCOF1-211ENST00000513346 MT1AP04731 61 aa3.21□□□□□ -1.89
TCOF1-211ENST00000513346 LCE4AQ5TA78 99 aa3.19□□□□□ -1.9
TCOF1-211ENST00000513346 LCE5AQ5TCM9 118 aa3.16□□□□□ -1.9
TCOF1-211ENST00000513346 NEBP20929 6669 aa3.16□□□□□ -1.9
TCOF1-211ENST00000513346 LCE1DQ5T752 114 aa3.15□□□□□ -1.91
TCOF1-211ENST00000513346 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
TCOF1-211ENST00000513346 KRTAP6-2Q3LI66 62 aa3.07□□□□□ -1.92
TCOF1-211ENST00000513346 KRTAP6-1Q3LI64 71 aa3.07□□□□□ -1.92
TCOF1-211ENST00000513346 KRTAP5-9P26371 169 aa3.06□□□□□ -1.92
TCOF1-211ENST00000513346 KRTAP9-4Q9BYQ2 154 aa2.96□□□□□ -1.94
TCOF1-211ENST00000513346 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
TCOF1-211ENST00000513346 KRTAP4-6Q9BYQ5 205 aa2.82□□□□□ -1.96
TCOF1-211ENST00000513346 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
TCOF1-211ENST00000513346 KRTAP5-5Q701N2 237 aaPredicted RBP2.7□□□□□ -1.98
TCOF1-211ENST00000513346 KRTAP9-9Q9BYP9 154 aa2.7□□□□□ -1.98
TCOF1-211ENST00000513346 KRTAP20-2Q3LI61 65 aa2.66□□□□□ -1.98
TCOF1-211ENST00000513346 LCE1CQ5T751 118 aa2.62□□□□□ -1.99
TCOF1-211ENST00000513346 LCE1EQ5T753 118 aa2.62□□□□□ -1.99
TCOF1-211ENST00000513346 LCE1FQ5T754 118 aa2.62□□□□□ -1.99
TCOF1-211ENST00000513346 KRTAP5-4Q6L8H1 288 aa2.56□□□□□ -2
TCOF1-211ENST00000513346 MUC5ACP98088 5654 aa2.54□□□□□ -2
TCOF1-211ENST00000513346 KRTAP4-11Q9BYQ6 195 aa2.54□□□□□ -2
TCOF1-211ENST00000513346 HMCN1Q96RW7 5635 aa2.46□□□□□ -2.02
TCOF1-211ENST00000513346 KRTAP5-3Q6L8H2 238 aa2.38□□□□□ -2.03
TCOF1-211ENST00000513346 AHNAK2Q8IVF2 5795 aa2.36□□□□□ -2.03
TCOF1-211ENST00000513346 KRTAP4-12Q9BQ66 201 aa2.35□□□□□ -2.03
TCOF1-211ENST00000513346 KRTAP4-2Q9BYR5 136 aa2.35□□□□□ -2.03
TCOF1-211ENST00000513346 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
TCOF1-211ENST00000513346 KRTAP5-8O75690 187 aa2.17□□□□□ -2.06
TCOF1-211ENST00000513346 KRTAP5-2Q701N4 177 aa2.08□□□□□ -2.08
TCOF1-211ENST00000513346 AHNAKQ09666 5890 aaKnown RBP2.03□□□□□ -2.08
TCOF1-211ENST00000513346 KRTAP5-10Q6L8G5 202 aa2.03□□□□□ -2.08
TCOF1-211ENST00000513346 MUC5BQ9HC84 5762 aaPredicted RBP2.02□□□□□ -2.09
TCOF1-211ENST00000513346 KRTAP5-1Q6L8H4 278 aa1.86□□□□□ -2.11
TCOF1-211ENST00000513346 KRTAP5-7Q6L8G8 165 aa1.85□□□□□ -2.11
TCOF1-211ENST00000513346 KRTAP5-11Q6L8G4 156 aa1.8□□□□□ -2.12
TCOF1-211ENST00000513346 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
TCOF1-211ENST00000513346 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
TCOF1-211ENST00000513346 KRTAP21-2Q3LI59 83 aa1.7□□□□□ -2.14
TCOF1-211ENST00000513346 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.64□□□□□ -2.15
TCOF1-211ENST00000513346 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 84.1 ms