RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 UBR4Q5T4S7 5183 aa1.51□□□□□ -2.17
NEDD4-209ENST00000508871 LCE3EQ5T5B0 92 aa1.5□□□□□ -2.17
NEDD4-209ENST00000508871 KRTAP19-8Q3LI54 63 aa1.5□□□□□ -2.17
NEDD4-209ENST00000508871 MT2AP02795 61 aa1.49□□□□□ -2.17
NEDD4-209ENST00000508871 KRTAP2-2Q9BYT5 123 aa1.49□□□□□ -2.17
NEDD4-209ENST00000508871 KRTAP10-10P60014 251 aa1.49□□□□□ -2.17
NEDD4-209ENST00000508871 SPRR5A0A1B0GTR4 108 aa1.48□□□□□ -2.17
NEDD4-209ENST00000508871 OBSCNQ5VST9 7968 aa1.47□□□□□ -2.17
NEDD4-209ENST00000508871 MT1FP04733 61 aa1.47□□□□□ -2.17
NEDD4-209ENST00000508871 MUC2Q02817 5179 aa1.47□□□□□ -2.17
NEDD4-209ENST00000508871 KRTAP5-8O75690 187 aa1.44□□□□□ -2.18
NEDD4-209ENST00000508871 LCE3DQ9BYE3 92 aa1.43□□□□□ -2.18
NEDD4-209ENST00000508871 MT1BP07438 61 aa1.42□□□□□ -2.18
NEDD4-209ENST00000508871 KRTAP12-4P60329 112 aa1.42□□□□□ -2.18
NEDD4-209ENST00000508871 KRTAP10-5P60370 271 aa1.39□□□□□ -2.19
NEDD4-209ENST00000508871 MT1XP80297 61 aa1.39□□□□□ -2.19
NEDD4-209ENST00000508871 RNF213Q63HN8 5207 aa1.37□□□□□ -2.19
NEDD4-209ENST00000508871 LCE1EQ5T753 118 aa1.36□□□□□ -2.19
NEDD4-209ENST00000508871 KRTAP19-6Q3LI70 58 aa1.35□□□□□ -2.19
NEDD4-209ENST00000508871 FAT4Q6V0I7 4981 aa1.34□□□□□ -2.19
NEDD4-209ENST00000508871 KRTAP8-1Q8IUC2 63 aa1.34□□□□□ -2.19
NEDD4-209ENST00000508871 LCE3AQ5TA76 89 aa1.33□□□□□ -2.2
NEDD4-209ENST00000508871 KRTAP4-4Q9BYR3 166 aa1.26□□□□□ -2.21
NEDD4-209ENST00000508871 KRTAP19-5Q3LI72 72 aa1.25□□□□□ -2.21
NEDD4-209ENST00000508871 MT1EP04732 61 aa1.22□□□□□ -2.21
NEDD4-209ENST00000508871 KRTAP19-7Q3SYF9 63 aa1.22□□□□□ -2.21
NEDD4-209ENST00000508871 USH2AO75445 5202 aa1.21□□□□□ -2.22
NEDD4-209ENST00000508871 SSPOA2VEC9 5147 aa1.21□□□□□ -2.22
NEDD4-209ENST00000508871 MT1LQ93083 61 aa1.2□□□□□ -2.22
NEDD4-209ENST00000508871 SYNE1Q8NF91 8797 aaKnown RBP1.19□□□□□ -2.22
NEDD4-209ENST00000508871 MT1GP13640 62 aa1.18□□□□□ -2.22
NEDD4-209ENST00000508871 CRCT1Q9UGL9 99 aa1.18□□□□□ -2.22
NEDD4-209ENST00000508871 KRTAP19-3Q7Z4W3 81 aa1.18□□□□□ -2.22
NEDD4-209ENST00000508871 KRTAP6-3Q3LI67 103 aa1.17□□□□□ -2.22
NEDD4-209ENST00000508871 KRTAP5-1Q6L8H4 278 aa1.16□□□□□ -2.22
NEDD4-209ENST00000508871 MT1MQ8N339 61 aa1.15□□□□□ -2.23
NEDD4-209ENST00000508871 PRM1P04553 51 aa1.14□□□□□ -2.23
NEDD4-209ENST00000508871 MUC19Q7Z5P9 8384 aa1.14□□□□□ -2.23
NEDD4-209ENST00000508871 KRTAP2-3P0C7H8 128 aa1.12□□□□□ -2.23
NEDD4-209ENST00000508871 SPRR2FQ96RM1 72 aa1.12□□□□□ -2.23
NEDD4-209ENST00000508871 KRTAP2-4Q9BYR9 128 aa1.12□□□□□ -2.23
NEDD4-209ENST00000508871 KRTAP2-1Q9BYU5 128 aa1.12□□□□□ -2.23
NEDD4-209ENST00000508871 DSTQ03001 7570 aaKnown RBP1.1□□□□□ -2.23
NEDD4-209ENST00000508871 GPR98Q8WXG9 6306 aa1.1□□□□□ -2.23
NEDD4-209ENST00000508871 SPRR2EP22531 72 aa1.1□□□□□ -2.23
NEDD4-209ENST00000508871 SPRR2BP35325 72 aa1.1□□□□□ -2.23
NEDD4-209ENST00000508871 SPRR2AP35326 72 aa1.1□□□□□ -2.23
NEDD4-209ENST00000508871 KRTAP9-6A8MVA2 160 aa1.08□□□□□ -2.24
NEDD4-209ENST00000508871 SPRR2DP22532 72 aa1.07□□□□□ -2.24
NEDD4-209ENST00000508871 MT1AP04731 61 aa1.06□□□□□ -2.24
NEDD4-209ENST00000508871 HMCN1Q96RW7 5635 aa1.04□□□□□ -2.24
NEDD4-209ENST00000508871 KRTAP5-11Q6L8G4 156 aa1.03□□□□□ -2.24
NEDD4-209ENST00000508871 KRTAP4-3Q9BYR4 195 aa1.03□□□□□ -2.25
NEDD4-209ENST00000508871 FCGBPQ9Y6R7 5405 aaPredicted RBP1.02□□□□□ -2.25
NEDD4-209ENST00000508871 MACF1Q9UPN3 7388 aaKnown RBP1.01□□□□□ -2.25
NEDD4-209ENST00000508871 KMT2DO14686 5537 aa0.99□□□□□ -2.25
NEDD4-209ENST00000508871 KRTAP6-1Q3LI64 71 aa0.98□□□□□ -2.25
NEDD4-209ENST00000508871 NEBP20929 6669 aa0.96□□□□□ -2.26
NEDD4-209ENST00000508871 KRTAP5-7Q6L8G8 165 aa0.96□□□□□ -2.26
NEDD4-209ENST00000508871 KRTAP20-1Q3LI63 56 aa0.95□□□□□ -2.26
NEDD4-209ENST00000508871 MDN1Q9NU22 5596 aa0.95□□□□□ -2.26
NEDD4-209ENST00000508871 MUC12Q9UKN1 5478 aa0.93□□□□□ -2.26
NEDD4-209ENST00000508871 SYNE2Q8WXH0 6885 aaKnown RBP0.92□□□□□ -2.26
NEDD4-209ENST00000508871 KRTAP20-2Q3LI61 65 aa0.9□□□□□ -2.26
NEDD4-209ENST00000508871 KRTAP6-2Q3LI66 62 aa0.89□□□□□ -2.27
NEDD4-209ENST00000508871 LCE1CQ5T751 118 aa0.89□□□□□ -2.27
NEDD4-209ENST00000508871 LCE1BQ5T7P3 118 aa0.89□□□□□ -2.27
NEDD4-209ENST00000508871 FSIP2Q5CZC0 6907 aa0.88□□□□□ -2.27
NEDD4-209ENST00000508871 MUC5BQ9HC84 5762 aaPredicted RBP0.86□□□□□ -2.27
NEDD4-209ENST00000508871 MT4P47944 62 aa0.85□□□□□ -2.27
NEDD4-209ENST00000508871 KRTAP5-10Q6L8G5 202 aa0.8□□□□□ -2.28
NEDD4-209ENST00000508871 AHNAKQ09666 5890 aaKnown RBP0.78□□□□□ -2.29
NEDD4-209ENST00000508871 AHNAK2Q8IVF2 5795 aa0.68□□□□□ -2.3
NEDD4-209ENST00000508871 MUC5ACP98088 5654 aa0.68□□□□□ -2.3
NEDD4-209ENST00000508871 KRTAP21-2Q3LI59 83 aa0.66□□□□□ -2.3
NEDD4-209ENST00000508871 KRTAP21-1Q3LI58 79 aa0.65□□□□□ -2.31
NEDD4-209ENST00000508871 PHGR1C9JFL3 82 aa0.58□□□□□ -2.32
NEDD4-209ENST00000508871 MUC16Q8WXI7 14507 aa0.46□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 152.8 ms