RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 KRTAP13-4Q3LI77 160 aa3.71□□□□□ -1.82
SCN1A-207ENST00000507401 PP632Q6XCG6 107 aa3.71□□□□□ -1.82
SCN1A-207ENST00000507401 MACF1Q9UPN3 7388 aaKnown RBP3.71□□□□□ -1.82
SCN1A-207ENST00000507401 KRTAP12-1P59990 96 aa3.69□□□□□ -1.82
SCN1A-207ENST00000507401 C10orf95Q9H7T3 257 aa3.68□□□□□ -1.82
SCN1A-207ENST00000507401 PLAC4Q8WY50 150 aa3.67□□□□□ -1.82
SCN1A-207ENST00000507401 KRTAP12-2P59991 146 aa3.66□□□□□ -1.82
SCN1A-207ENST00000507401 SYNE2Q8WXH0 6885 aaKnown RBP3.65□□□□□ -1.83
SCN1A-207ENST00000507401 CAMK2N1Q7Z7J9 78 aa3.61□□□□□ -1.83
SCN1A-207ENST00000507401 SPRR2GQ9BYE4 73 aa3.61□□□□□ -1.83
SCN1A-207ENST00000507401 KRTAP10-5P60370 271 aa3.6□□□□□ -1.83
SCN1A-207ENST00000507401 KRTAP19-8Q3LI54 63 aa3.59□□□□□ -1.83
SCN1A-207ENST00000507401 KRTAP6-3Q3LI67 103 aa3.59□□□□□ -1.83
SCN1A-207ENST00000507401 MT1BP07438 61 aa3.57□□□□□ -1.84
SCN1A-207ENST00000507401 LCE1FQ5T754 118 aa3.56□□□□□ -1.84
SCN1A-207ENST00000507401 KRTAP10-12P60413 245 aa3.5□□□□□ -1.85
SCN1A-207ENST00000507401 R4GN34 69 aa3.5□□□□□ -1.85
SCN1A-207ENST00000507401 KRTAP9-6A8MVA2 160 aa3.44□□□□□ -1.86
SCN1A-207ENST00000507401 SPRR5A0A1B0GTR4 108 aa3.43□□□□□ -1.86
SCN1A-207ENST00000507401 PRO2289Q9P1D8 64 aa3.43□□□□□ -1.86
SCN1A-207ENST00000507401 NEBP20929 6669 aa3.42□□□□□ -1.86
SCN1A-207ENST00000507401 INE1O15225 51 aa3.41□□□□□ -1.86
SCN1A-207ENST00000507401 MUC12Q9UKN1 5478 aa3.4□□□□□ -1.86
SCN1A-207ENST00000507401 OBSCNQ5VST9 7968 aa3.39□□□□□ -1.87
SCN1A-207ENST00000507401 TNP1P09430 55 aa3.37□□□□□ -1.87
SCN1A-207ENST00000507401 KMT2DO14686 5537 aa3.35□□□□□ -1.87
SCN1A-207ENST00000507401 MT1XP80297 61 aa3.34□□□□□ -1.87
SCN1A-207ENST00000507401 LCE3CQ5T5A8 94 aa3.32□□□□□ -1.88
SCN1A-207ENST00000507401 KRTAP20-1Q3LI63 56 aa3.31□□□□□ -1.88
SCN1A-207ENST00000507401 MDN1Q9NU22 5596 aa3.3□□□□□ -1.88
SCN1A-207ENST00000507401 SPRR2FQ96RM1 72 aa3.27□□□□□ -1.89
SCN1A-207ENST00000507401 KRTAP8-1Q8IUC2 63 aa3.26□□□□□ -1.89
SCN1A-207ENST00000507401 KRTAP2-3P0C7H8 128 aa3.25□□□□□ -1.89
SCN1A-207ENST00000507401 KRTAP2-4Q9BYR9 128 aa3.25□□□□□ -1.89
SCN1A-207ENST00000507401 KRTAP5-2Q701N4 177 aa3.24□□□□□ -1.89
SCN1A-207ENST00000507401 SPRR2EP22531 72 aa3.22□□□□□ -1.89
SCN1A-207ENST00000507401 SPRR2BP35325 72 aa3.22□□□□□ -1.89
SCN1A-207ENST00000507401 SPRR2AP35326 72 aa3.22□□□□□ -1.89
SCN1A-207ENST00000507401 KRTAP4-3Q9BYR4 195 aa3.18□□□□□ -1.9
SCN1A-207ENST00000507401 KRTAP2-1Q9BYU5 128 aa3.15□□□□□ -1.91
SCN1A-207ENST00000507401 SPRR2DP22532 72 aa3.12□□□□□ -1.91
SCN1A-207ENST00000507401 LCE3EQ5T5B0 92 aa3.03□□□□□ -1.92
SCN1A-207ENST00000507401 KRTAP19-7Q3SYF9 63 aa3□□□□□ -1.93
SCN1A-207ENST00000507401 MT1EP04732 61 aa2.97□□□□□ -1.93
SCN1A-207ENST00000507401 DSTQ03001 7570 aaKnown RBP2.97□□□□□ -1.93
SCN1A-207ENST00000507401 KRTAP19-3Q7Z4W3 81 aa2.96□□□□□ -1.94
SCN1A-207ENST00000507401 LCE3AQ5TA76 89 aa2.94□□□□□ -1.94
SCN1A-207ENST00000507401 MT1GP13640 62 aa2.92□□□□□ -1.94
SCN1A-207ENST00000507401 KRTAP19-5Q3LI72 72 aa2.9□□□□□ -1.95
SCN1A-207ENST00000507401 KRTAP12-3P60328 96 aa2.89□□□□□ -1.95
SCN1A-207ENST00000507401 MT1MQ8N339 61 aa2.83□□□□□ -1.96
SCN1A-207ENST00000507401 MT1LQ93083 61 aa2.83□□□□□ -1.96
SCN1A-207ENST00000507401 GPR98Q8WXG9 6306 aa2.82□□□□□ -1.96
SCN1A-207ENST00000507401 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
SCN1A-207ENST00000507401 KRTAP5-5Q701N2 237 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-207ENST00000507401 MT4P47944 62 aa2.72□□□□□ -1.97
SCN1A-207ENST00000507401 HMCN1Q96RW7 5635 aa2.72□□□□□ -1.97
SCN1A-207ENST00000507401 AHNAK2Q8IVF2 5795 aa2.61□□□□□ -1.99
SCN1A-207ENST00000507401 KRTAP5-10Q6L8G5 202 aa2.6□□□□□ -1.99
SCN1A-207ENST00000507401 KRTAP12-4P60329 112 aa2.56□□□□□ -2
SCN1A-207ENST00000507401 KRTAP20-2Q3LI61 65 aa2.56□□□□□ -2
SCN1A-207ENST00000507401 SYNE1Q8NF91 8797 aaKnown RBP2.55□□□□□ -2
SCN1A-207ENST00000507401 LCE1CQ5T751 118 aa2.53□□□□□ -2
SCN1A-207ENST00000507401 LCE1BQ5T7P3 118 aa2.53□□□□□ -2
SCN1A-207ENST00000507401 KRTAP5-7Q6L8G8 165 aa2.51□□□□□ -2.01
SCN1A-207ENST00000507401 MT1AP04731 61 aa2.42□□□□□ -2.02
SCN1A-207ENST00000507401 LCE3DQ9BYE3 92 aa2.4□□□□□ -2.03
SCN1A-207ENST00000507401 KRTAP6-1Q3LI64 71 aa2.38□□□□□ -2.03
SCN1A-207ENST00000507401 KRTAP6-2Q3LI66 62 aa2.29□□□□□ -2.04
SCN1A-207ENST00000507401 AHNAKQ09666 5890 aaKnown RBP2.18□□□□□ -2.06
SCN1A-207ENST00000507401 MUC5ACP98088 5654 aa2.17□□□□□ -2.06
SCN1A-207ENST00000507401 MUC5BQ9HC84 5762 aaPredicted RBP2.16□□□□□ -2.06
SCN1A-207ENST00000507401 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
SCN1A-207ENST00000507401 PRM1P04553 51 aa2.1□□□□□ -2.07
SCN1A-207ENST00000507401 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.11
SCN1A-207ENST00000507401 PHGR1C9JFL3 82 aa1.5□□□□□ -2.17
SCN1A-207ENST00000507401 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
SCN1A-207ENST00000507401 MUC16Q8WXI7 14507 aa0.91□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 11.4 ms