RNA–Protein interactions for RNA: ENST00000506767.1

TCOF1-210, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 869 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-210ENST00000506767 KRTAP19-5Q3LI72 72 aa4.76□□□□□ -1.65
TCOF1-210ENST00000506767 MT1EP04732 61 aa4.75□□□□□ -1.65
TCOF1-210ENST00000506767 SPRR2DP22532 72 aa4.75□□□□□ -1.65
TCOF1-210ENST00000506767 KRTAP2-2Q9BYT5 123 aa4.75□□□□□ -1.65
TCOF1-210ENST00000506767 KRTAP2-1Q9BYU5 128 aa4.75□□□□□ -1.65
TCOF1-210ENST00000506767 ROMO1P60602 79 aa4.72□□□□□ -1.65
TCOF1-210ENST00000506767 BRK1Q8WUW1 75 aa4.68□□□□□ -1.66
TCOF1-210ENST00000506767 KRTAP19-3Q7Z4W3 81 aa4.64□□□□□ -1.67
TCOF1-210ENST00000506767 LCE3BQ5TA77 95 aa4.63□□□□□ -1.67
TCOF1-210ENST00000506767 LCE5AQ5TCM9 118 aa4.63□□□□□ -1.67
TCOF1-210ENST00000506767 KRTAP12-3P60328 96 aa4.62□□□□□ -1.67
TCOF1-210ENST00000506767 MT1LQ93083 61 aa4.59□□□□□ -1.67
TCOF1-210ENST00000506767 MT1GP13640 62 aa4.58□□□□□ -1.68
TCOF1-210ENST00000506767 PP632Q6XCG6 107 aa4.54□□□□□ -1.68
TCOF1-210ENST00000506767 MT1MQ8N339 61 aa4.5□□□□□ -1.69
TCOF1-210ENST00000506767 PMAIP1Q13794 54 aa4.43□□□□□ -1.7
TCOF1-210ENST00000506767 KRTAP15-1Q3LI76 137 aa4.43□□□□□ -1.7
TCOF1-210ENST00000506767 KRTAP19-4Q3LI73 84 aa4.41□□□□□ -1.7
TCOF1-210ENST00000506767 KRTAP4-9Q9BYQ8 210 aa4.39□□□□□ -1.71
TCOF1-210ENST00000506767 DSTQ03001 7570 aaKnown RBP4.39□□□□□ -1.71
TCOF1-210ENST00000506767 KRTAP4-7Q9BYR0 210 aa4.38□□□□□ -1.71
TCOF1-210ENST00000506767 KRTAP4-3Q9BYR4 195 aa4.38□□□□□ -1.71
TCOF1-210ENST00000506767 PRO0628Q9UI54 55 aa4.38□□□□□ -1.71
TCOF1-210ENST00000506767 GPR98Q8WXG9 6306 aa4.31□□□□□ -1.72
TCOF1-210ENST00000506767 LCE3CQ5T5A8 94 aa4.29□□□□□ -1.72
TCOF1-210ENST00000506767 PRAC1Q96KF2 57 aa4.28□□□□□ -1.72
TCOF1-210ENST00000506767 LCE1DQ5T752 114 aa4.22□□□□□ -1.73
TCOF1-210ENST00000506767 MT4P47944 62 aa4.2□□□□□ -1.74
TCOF1-210ENST00000506767 LCE4AQ5TA78 99 aa4.14□□□□□ -1.75
TCOF1-210ENST00000506767 LOC100996750A0A140TA64 210 aa4.13□□□□□ -1.75
TCOF1-210ENST00000506767 KRTAP5-4Q6L8H1 288 aa4.13□□□□□ -1.75
TCOF1-210ENST00000506767 KRTAP5-5Q701N2 237 aaPredicted RBP4.12□□□□□ -1.75
TCOF1-210ENST00000506767 KTN1-AS1Q86SY8 53 aa4.11□□□□□ -1.75
TCOF1-210ENST00000506767 HMCN1Q96RW7 5635 aa4.07□□□□□ -1.76
TCOF1-210ENST00000506767 KRTAP9-6A8MVA2 160 aa4.06□□□□□ -1.76
TCOF1-210ENST00000506767 KRTAP4-6Q9BYQ5 205 aa4.04□□□□□ -1.76
TCOF1-210ENST00000506767 AHNAK2Q8IVF2 5795 aa3.99□□□□□ -1.77
TCOF1-210ENST00000506767 KRTAP5-10Q6L8G5 202 aa3.95□□□□□ -1.78
TCOF1-210ENST00000506767 MT1AP04731 61 aa3.92□□□□□ -1.78
TCOF1-210ENST00000506767 KRTAP12-4P60329 112 aa3.89□□□□□ -1.79
TCOF1-210ENST00000506767 SPRR5A0A1B0GTR4 108 aa3.88□□□□□ -1.79
TCOF1-210ENST00000506767 KRTAP6-1Q3LI64 71 aa3.87□□□□□ -1.79
TCOF1-210ENST00000506767 KRTAP20-2Q3LI61 65 aa3.86□□□□□ -1.79
TCOF1-210ENST00000506767 KRTAP5-3Q6L8H2 238 aa3.85□□□□□ -1.79
TCOF1-210ENST00000506767 SYNE1Q8NF91 8797 aaKnown RBP3.83□□□□□ -1.8
TCOF1-210ENST00000506767 NDUFAF8A1L188 74 aa3.83□□□□□ -1.8
TCOF1-210ENST00000506767 KRTAP5-7Q6L8G8 165 aa3.81□□□□□ -1.8
TCOF1-210ENST00000506767 KRTAP9-4Q9BYQ2 154 aa3.76□□□□□ -1.81
TCOF1-210ENST00000506767 KRTAP5-2Q701N4 177 aa3.68□□□□□ -1.82
TCOF1-210ENST00000506767 LUZP6Q538Z0 58 aa3.67□□□□□ -1.82
TCOF1-210ENST00000506767 KRTAP6-2Q3LI66 62 aa3.63□□□□□ -1.83
TCOF1-210ENST00000506767 MT3P25713 68 aa3.56□□□□□ -1.84
TCOF1-210ENST00000506767 KRTAP4-11Q9BYQ6 195 aa3.55□□□□□ -1.84
TCOF1-210ENST00000506767 KRTAP5-8O75690 187 aa3.41□□□□□ -1.86
TCOF1-210ENST00000506767 OBSCNQ5VST9 7968 aa3.35□□□□□ -1.87
TCOF1-210ENST00000506767 KRTAP9-9Q9BYP9 154 aa3.33□□□□□ -1.88
TCOF1-210ENST00000506767 AHNAKQ09666 5890 aaKnown RBP3.3□□□□□ -1.88
TCOF1-210ENST00000506767 MUC5ACP98088 5654 aa3.27□□□□□ -1.89
TCOF1-210ENST00000506767 MUC5BQ9HC84 5762 aaPredicted RBP3.26□□□□□ -1.89
TCOF1-210ENST00000506767 KRTAP5-1Q6L8H4 278 aa3.24□□□□□ -1.89
TCOF1-210ENST00000506767 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
TCOF1-210ENST00000506767 KRTAP4-12Q9BQ66 201 aa3.19□□□□□ -1.9
TCOF1-210ENST00000506767 LCE3DQ9BYE3 92 aa3.15□□□□□ -1.91
TCOF1-210ENST00000506767 LCE3EQ5T5B0 92 aa3.02□□□□□ -1.93
TCOF1-210ENST00000506767 KRTAP4-2Q9BYR5 136 aa3.01□□□□□ -1.93
TCOF1-210ENST00000506767 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
TCOF1-210ENST00000506767 LCE1BQ5T7P3 118 aa2.98□□□□□ -1.93
TCOF1-210ENST00000506767 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
TCOF1-210ENST00000506767 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.76□□□□□ -1.97
TCOF1-210ENST00000506767 KRTAP5-11Q6L8G4 156 aa2.67□□□□□ -1.98
TCOF1-210ENST00000506767 INE1O15225 51 aa2.6□□□□□ -1.99
TCOF1-210ENST00000506767 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
TCOF1-210ENST00000506767 PRM1P04553 51 aa2.43□□□□□ -2.02
TCOF1-210ENST00000506767 PHGR1C9JFL3 82 aa2.35□□□□□ -2.03
TCOF1-210ENST00000506767 KRTAP4-4Q9BYR3 166 aa2.27□□□□□ -2.05
TCOF1-210ENST00000506767 MUC19Q7Z5P9 8384 aa2.05□□□□□ -2.08
TCOF1-210ENST00000506767 KRTAP21-1Q3LI58 79 aa1.76□□□□□ -2.13
TCOF1-210ENST00000506767 MUC16Q8WXI7 14507 aa1.48□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 129.5 ms