RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 KRTAP9-6A8MVA2 160 aa5.59□□□□□ -1.51
SCLT1-208ENST00000506368 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.57□□□□□ -1.52
SCLT1-208ENST00000506368 SYNE2Q8WXH0 6885 aaKnown RBP5.56□□□□□ -1.52
SCLT1-208ENST00000506368 KMT2DO14686 5537 aa5.54□□□□□ -1.52
SCLT1-208ENST00000506368 KRTAP19-7Q3SYF9 63 aa5.41□□□□□ -1.54
SCLT1-208ENST00000506368 KRTAP9-7A8MTY7 169 aa5.38□□□□□ -1.55
SCLT1-208ENST00000506368 KRTAP4-8A0A0G2JLE6 195 aa5.38□□□□□ -1.55
SCLT1-208ENST00000506368 KRTAP4-8Q9BYQ9 185 aa5.38□□□□□ -1.55
SCLT1-208ENST00000506368 MT1LQ93083 61 aa5.32□□□□□ -1.56
SCLT1-208ENST00000506368 KRTAP4-7Q9BYR0 210 aa5.27□□□□□ -1.57
SCLT1-208ENST00000506368 MUC12Q9UKN1 5478 aa5.26□□□□□ -1.57
SCLT1-208ENST00000506368 KRTAP6-3Q3LI67 103 aa5.26□□□□□ -1.57
SCLT1-208ENST00000506368 MT1EP04732 61 aa5.24□□□□□ -1.57
SCLT1-208ENST00000506368 KRTAP5-9P26371 169 aa5.19□□□□□ -1.58
SCLT1-208ENST00000506368 SPRR2FQ96RM1 72 aa5.19□□□□□ -1.58
SCLT1-208ENST00000506368 MDN1Q9NU22 5596 aa5.16□□□□□ -1.58
SCLT1-208ENST00000506368 KRTAP12-4P60329 112 aa5.09□□□□□ -1.59
SCLT1-208ENST00000506368 LCE3BQ5TA77 95 aa5.05□□□□□ -1.6
SCLT1-208ENST00000506368 NEBP20929 6669 aa5.04□□□□□ -1.6
SCLT1-208ENST00000506368 SPRR2EP22531 72 aa5□□□□□ -1.61
SCLT1-208ENST00000506368 SPRR2BP35325 72 aa5□□□□□ -1.61
SCLT1-208ENST00000506368 SPRR2AP35326 72 aa5□□□□□ -1.61
SCLT1-208ENST00000506368 LCE1AQ5T7P2 110 aa4.99□□□□□ -1.61
SCLT1-208ENST00000506368 KRTAP9-9Q9BYP9 154 aa4.91□□□□□ -1.62
SCLT1-208ENST00000506368 KRTAP9-4Q9BYQ2 154 aa4.91□□□□□ -1.62
SCLT1-208ENST00000506368 MT1GP13640 62 aa4.9□□□□□ -1.62
SCLT1-208ENST00000506368 MT1MQ8N339 61 aa4.87□□□□□ -1.63
SCLT1-208ENST00000506368 KRTAP19-3Q7Z4W3 81 aa4.85□□□□□ -1.63
SCLT1-208ENST00000506368 MT1AP04731 61 aa4.84□□□□□ -1.64
SCLT1-208ENST00000506368 KRTAP5-3Q6L8H2 238 aa4.82□□□□□ -1.64
SCLT1-208ENST00000506368 SPRR2DP22532 72 aa4.82□□□□□ -1.64
SCLT1-208ENST00000506368 LCE5AQ5TCM9 118 aa4.81□□□□□ -1.64
SCLT1-208ENST00000506368 KRTAP4-3Q9BYR4 195 aa4.79□□□□□ -1.64
SCLT1-208ENST00000506368 DSTQ03001 7570 aaKnown RBP4.79□□□□□ -1.64
SCLT1-208ENST00000506368 KRTAP4-12Q9BQ66 201 aa4.77□□□□□ -1.65
SCLT1-208ENST00000506368 LCE1DQ5T752 114 aa4.76□□□□□ -1.65
SCLT1-208ENST00000506368 KRTAP20-1Q3LI63 56 aa4.73□□□□□ -1.65
SCLT1-208ENST00000506368 KRTAP4-2Q9BYR5 136 aa4.72□□□□□ -1.65
SCLT1-208ENST00000506368 KRTAP4-9Q9BYQ8 210 aa4.71□□□□□ -1.65
SCLT1-208ENST00000506368 LCE3EQ5T5B0 92 aa4.64□□□□□ -1.67
SCLT1-208ENST00000506368 LCE3DQ9BYE3 92 aa4.63□□□□□ -1.67
SCLT1-208ENST00000506368 KRTAP2-2Q9BYT5 123 aa4.55□□□□□ -1.68
SCLT1-208ENST00000506368 PRM1P04553 51 aa4.55□□□□□ -1.68
SCLT1-208ENST00000506368 KRTAP5-5Q701N2 237 aaPredicted RBP4.52□□□□□ -1.69
SCLT1-208ENST00000506368 KRTAP6-1Q3LI64 71 aa4.45□□□□□ -1.7
SCLT1-208ENST00000506368 KRTAP4-11Q9BYQ6 195 aa4.37□□□□□ -1.71
SCLT1-208ENST00000506368 SYNE1Q8NF91 8797 aaKnown RBP4.36□□□□□ -1.71
SCLT1-208ENST00000506368 KRTAP6-2Q3LI66 62 aa4.28□□□□□ -1.72
SCLT1-208ENST00000506368 MT4P47944 62 aa4.25□□□□□ -1.73
SCLT1-208ENST00000506368 KRTAP5-4Q6L8H1 288 aa4.25□□□□□ -1.73
SCLT1-208ENST00000506368 LCE4AQ5TA78 99 aa4.22□□□□□ -1.73
SCLT1-208ENST00000506368 HMCN1Q96RW7 5635 aa4.16□□□□□ -1.74
SCLT1-208ENST00000506368 MT3P25713 68 aa4.04□□□□□ -1.76
SCLT1-208ENST00000506368 KRTAP20-2Q3LI61 65 aa4.01□□□□□ -1.77
SCLT1-208ENST00000506368 AHNAK2Q8IVF2 5795 aa3.83□□□□□ -1.8
SCLT1-208ENST00000506368 KRTAP5-2Q701N4 177 aa3.79□□□□□ -1.8
SCLT1-208ENST00000506368 OBSCNQ5VST9 7968 aa3.75□□□□□ -1.81
SCLT1-208ENST00000506368 GPR98Q8WXG9 6306 aa3.75□□□□□ -1.81
SCLT1-208ENST00000506368 KRTAP5-10Q6L8G5 202 aa3.7□□□□□ -1.82
SCLT1-208ENST00000506368 LCE1EQ5T753 118 aa3.56□□□□□ -1.84
SCLT1-208ENST00000506368 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.5□□□□□ -1.85
SCLT1-208ENST00000506368 KRTAP5-7Q6L8G8 165 aa3.46□□□□□ -1.86
SCLT1-208ENST00000506368 KRTAP5-8O75690 187 aa3.45□□□□□ -1.86
SCLT1-208ENST00000506368 KRTAP5-1Q6L8H4 278 aa3.36□□□□□ -1.87
SCLT1-208ENST00000506368 MUC5ACP98088 5654 aa3.25□□□□□ -1.89
SCLT1-208ENST00000506368 LCE1BQ5T7P3 118 aa3.16□□□□□ -1.9
SCLT1-208ENST00000506368 MUC5BQ9HC84 5762 aaPredicted RBP3.1□□□□□ -1.91
SCLT1-208ENST00000506368 LCE1CQ5T751 118 aa3.06□□□□□ -1.92
SCLT1-208ENST00000506368 KRTAP21-1Q3LI58 79 aa3□□□□□ -1.93
SCLT1-208ENST00000506368 AHNAKQ09666 5890 aaKnown RBP2.97□□□□□ -1.93
SCLT1-208ENST00000506368 KRTAP21-2Q3LI59 83 aa2.89□□□□□ -1.95
SCLT1-208ENST00000506368 KRTAP5-11Q6L8G4 156 aa2.84□□□□□ -1.95
SCLT1-208ENST00000506368 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
SCLT1-208ENST00000506368 LCE1FQ5T754 118 aa2.75□□□□□ -1.97
SCLT1-208ENST00000506368 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
SCLT1-208ENST00000506368 PHGR1C9JFL3 82 aa2.37□□□□□ -2.03
SCLT1-208ENST00000506368 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 7.9 ms