RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 MT1MQ8N339 61 aa5.18□□□□□ -1.58
PCDHA1-203ENST00000504120 LCE2DQ5TA82 110 aaPredicted RBP5.16□□□□□ -1.58
PCDHA1-203ENST00000504120 MT3P25713 68 aa5.11□□□□□ -1.59
PCDHA1-203ENST00000504120 HMCN2Q8NDA2 5059 aa5.11□□□□□ -1.59
PCDHA1-203ENST00000504120 KRTAP9-2Q9BYQ4 174 aa5.06□□□□□ -1.6
PCDHA1-203ENST00000504120 UBR4Q5T4S7 5183 aa5.04□□□□□ -1.6
PCDHA1-203ENST00000504120 FSIP2Q5CZC0 6907 aa5.03□□□□□ -1.6
PCDHA1-203ENST00000504120 LOC100996750A0A140TA64 210 aa5.01□□□□□ -1.61
PCDHA1-203ENST00000504120 KRTAP19-7Q3SYF9 63 aa4.99□□□□□ -1.61
PCDHA1-203ENST00000504120 KRTAP4-3Q9BYR4 195 aa4.96□□□□□ -1.62
PCDHA1-203ENST00000504120 MT4P47944 62 aa4.94□□□□□ -1.62
PCDHA1-203ENST00000504120 PRM1P04553 51 aa4.93□□□□□ -1.62
PCDHA1-203ENST00000504120 MT1AP04731 61 aa4.85□□□□□ -1.63
PCDHA1-203ENST00000504120 SYNE1Q8NF91 8797 aaKnown RBP4.85□□□□□ -1.63
PCDHA1-203ENST00000504120 KRTAP2-3P0C7H8 128 aa4.77□□□□□ -1.65
PCDHA1-203ENST00000504120 LCE1BQ5T7P3 118 aa4.77□□□□□ -1.65
PCDHA1-203ENST00000504120 KRTAP2-4Q9BYR9 128 aa4.77□□□□□ -1.65
PCDHA1-203ENST00000504120 KRTAP2-1Q9BYU5 128 aa4.77□□□□□ -1.65
PCDHA1-203ENST00000504120 LCE1DQ5T752 114 aa4.77□□□□□ -1.65
PCDHA1-203ENST00000504120 KRTAP9-6A0A140TA67 174 aa4.76□□□□□ -1.65
PCDHA1-203ENST00000504120 MUC2Q02817 5179 aa4.68□□□□□ -1.66
PCDHA1-203ENST00000504120 LCE1AQ5T7P2 110 aa4.68□□□□□ -1.66
PCDHA1-203ENST00000504120 KRTAP4-9Q9BYQ8 210 aa4.64□□□□□ -1.67
PCDHA1-203ENST00000504120 KRTAP6-3Q3LI67 103 aa4.61□□□□□ -1.67
PCDHA1-203ENST00000504120 LCE5AQ5TCM9 118 aa4.57□□□□□ -1.68
PCDHA1-203ENST00000504120 KRTAP9-6A8MVA2 160 aa4.51□□□□□ -1.69
PCDHA1-203ENST00000504120 KRTAP6-1Q3LI64 71 aa4.5□□□□□ -1.69
PCDHA1-203ENST00000504120 KRTAP9-7A8MTY7 169 aa4.48□□□□□ -1.69
PCDHA1-203ENST00000504120 KRTAP20-1Q3LI63 56 aa4.47□□□□□ -1.69
PCDHA1-203ENST00000504120 SYNE2Q8WXH0 6885 aaKnown RBP4.47□□□□□ -1.69
PCDHA1-203ENST00000504120 KRTAP9-4Q9BYQ2 154 aa4.46□□□□□ -1.7
PCDHA1-203ENST00000504120 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.44□□□□□ -1.7
PCDHA1-203ENST00000504120 KRTAP6-2Q3LI66 62 aa4.44□□□□□ -1.7
PCDHA1-203ENST00000504120 USH2AO75445 5202 aa4.42□□□□□ -1.7
PCDHA1-203ENST00000504120 OBSCNQ5VST9 7968 aa4.41□□□□□ -1.7
PCDHA1-203ENST00000504120 LCE4AQ5TA78 99 aa4.37□□□□□ -1.71
PCDHA1-203ENST00000504120 KRTAP2-2Q9BYT5 123 aa4.23□□□□□ -1.73
PCDHA1-203ENST00000504120 KRTAP5-9P26371 169 aa4.15□□□□□ -1.75
PCDHA1-203ENST00000504120 DSTQ03001 7570 aaKnown RBP4.06□□□□□ -1.76
PCDHA1-203ENST00000504120 FCGBPQ9Y6R7 5405 aaPredicted RBP4.04□□□□□ -1.76
PCDHA1-203ENST00000504120 LCE1CQ5T751 118 aa4.03□□□□□ -1.76
PCDHA1-203ENST00000504120 LCE1EQ5T753 118 aa4.03□□□□□ -1.76
PCDHA1-203ENST00000504120 LCE1FQ5T754 118 aa4.03□□□□□ -1.76
PCDHA1-203ENST00000504120 KMT2DO14686 5537 aa4.02□□□□□ -1.77
PCDHA1-203ENST00000504120 MACF1Q9UPN3 7388 aaKnown RBP4.01□□□□□ -1.77
PCDHA1-203ENST00000504120 SSPOA2VEC9 5147 aa3.99□□□□□ -1.77
PCDHA1-203ENST00000504120 NEBP20929 6669 aa3.83□□□□□ -1.8
PCDHA1-203ENST00000504120 MUC12Q9UKN1 5478 aa3.82□□□□□ -1.8
PCDHA1-203ENST00000504120 KRTAP9-9Q9BYP9 154 aa3.76□□□□□ -1.81
PCDHA1-203ENST00000504120 MDN1Q9NU22 5596 aa3.74□□□□□ -1.81
PCDHA1-203ENST00000504120 KRTAP20-2Q3LI61 65 aa3.71□□□□□ -1.82
PCDHA1-203ENST00000504120 KRTAP4-6Q9BYQ5 205 aa3.69□□□□□ -1.82
PCDHA1-203ENST00000504120 KRTAP4-11Q9BYQ6 195 aa3.61□□□□□ -1.83
PCDHA1-203ENST00000504120 GPR98Q8WXG9 6306 aa3.58□□□□□ -1.84
PCDHA1-203ENST00000504120 KRTAP5-5Q701N2 237 aaPredicted RBP3.54□□□□□ -1.84
PCDHA1-203ENST00000504120 KRTAP5-4Q6L8H1 288 aa3.53□□□□□ -1.84
PCDHA1-203ENST00000504120 MUC19Q7Z5P9 8384 aa3.48□□□□□ -1.85
PCDHA1-203ENST00000504120 KRTAP4-4Q9BYR3 166 aa3.3□□□□□ -1.88
PCDHA1-203ENST00000504120 KRTAP4-12Q9BQ66 201 aa3.24□□□□□ -1.89
PCDHA1-203ENST00000504120 KRTAP4-2Q9BYR5 136 aa3.24□□□□□ -1.89
PCDHA1-203ENST00000504120 KRTAP5-3Q6L8H2 238 aa3.07□□□□□ -1.92
PCDHA1-203ENST00000504120 MUC5ACP98088 5654 aa2.97□□□□□ -1.93
PCDHA1-203ENST00000504120 KRTAP5-2Q701N4 177 aa2.97□□□□□ -1.93
PCDHA1-203ENST00000504120 HMCN1Q96RW7 5635 aa2.89□□□□□ -1.95
PCDHA1-203ENST00000504120 AHNAK2Q8IVF2 5795 aa2.82□□□□□ -1.96
PCDHA1-203ENST00000504120 KRTAP5-8O75690 187 aa2.76□□□□□ -1.97
PCDHA1-203ENST00000504120 KRTAP5-10Q6L8G5 202 aa2.72□□□□□ -1.97
PCDHA1-203ENST00000504120 KRTAP5-1Q6L8H4 278 aa2.55□□□□□ -2
PCDHA1-203ENST00000504120 KRTAP5-11Q6L8G4 156 aa2.54□□□□□ -2
PCDHA1-203ENST00000504120 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2.01
PCDHA1-203ENST00000504120 KRTAP21-2Q3LI59 83 aa2.4□□□□□ -2.02
PCDHA1-203ENST00000504120 AHNAKQ09666 5890 aaKnown RBP2.4□□□□□ -2.02
PCDHA1-203ENST00000504120 PHGR1C9JFL3 82 aa2.4□□□□□ -2.03
PCDHA1-203ENST00000504120 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.39□□□□□ -2.03
PCDHA1-203ENST00000504120 KRTAP21-1Q3LI58 79 aa2.24□□□□□ -2.05
PCDHA1-203ENST00000504120 KRTAP5-7Q6L8G8 165 aa2.22□□□□□ -2.05
PCDHA1-203ENST00000504120 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 101.5 ms