RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 CRCT1Q9UGL9 99 aa7.39□□□□□ -1.23
UBE2D3-216ENST00000503742 MACF1Q9UPN3 7388 aaKnown RBP7.33□□□□□ -1.24
UBE2D3-216ENST00000503742 KRTAP9-6A0A140TA67 174 aa7.29□□□□□ -1.24
UBE2D3-216ENST00000503742 KRTAP9-6A8MVA2 160 aa7.29□□□□□ -1.24
UBE2D3-216ENST00000503742 MUC12Q9UKN1 5478 aa7.29□□□□□ -1.24
UBE2D3-216ENST00000503742 KRTAP19-3Q7Z4W3 81 aa7.28□□□□□ -1.24
UBE2D3-216ENST00000503742 SPRR2FQ96RM1 72 aa7.25□□□□□ -1.25
UBE2D3-216ENST00000503742 MT1GP13640 62 aa7.23□□□□□ -1.25
UBE2D3-216ENST00000503742 MT1MQ8N339 61 aa7.19□□□□□ -1.26
UBE2D3-216ENST00000503742 LCE5AQ5TCM9 118 aa7.13□□□□□ -1.27
UBE2D3-216ENST00000503742 KRTAP4-3Q9BYR4 195 aa7.1□□□□□ -1.27
UBE2D3-216ENST00000503742 KRTAP5-9P26371 169 aa7.09□□□□□ -1.27
UBE2D3-216ENST00000503742 SYNE2Q8WXH0 6885 aaKnown RBP7.08□□□□□ -1.28
UBE2D3-216ENST00000503742 LOC100996750A0A140TA64 210 aa6.93□□□□□ -1.3
UBE2D3-216ENST00000503742 LCE1AQ5T7P2 110 aa6.91□□□□□ -1.3
UBE2D3-216ENST00000503742 MDN1Q9NU22 5596 aa6.89□□□□□ -1.31
UBE2D3-216ENST00000503742 KRTAP2-3P0C7H8 128 aa6.86□□□□□ -1.31
UBE2D3-216ENST00000503742 KRTAP2-4Q9BYR9 128 aa6.86□□□□□ -1.31
UBE2D3-216ENST00000503742 KRTAP2-1Q9BYU5 128 aa6.86□□□□□ -1.31
UBE2D3-216ENST00000503742 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.84□□□□□ -1.32
UBE2D3-216ENST00000503742 SPRR2EP22531 72 aa6.78□□□□□ -1.32
UBE2D3-216ENST00000503742 SPRR2BP35325 72 aa6.78□□□□□ -1.32
UBE2D3-216ENST00000503742 SPRR2AP35326 72 aa6.78□□□□□ -1.32
UBE2D3-216ENST00000503742 KRTAP6-3Q3LI67 103 aa6.78□□□□□ -1.32
UBE2D3-216ENST00000503742 DSTQ03001 7570 aaKnown RBP6.73□□□□□ -1.33
UBE2D3-216ENST00000503742 KRTAP9-7A8MTY7 169 aa6.58□□□□□ -1.36
UBE2D3-216ENST00000503742 SPRR2DP22532 72 aa6.52□□□□□ -1.37
UBE2D3-216ENST00000503742 KRTAP5-5Q701N2 237 aaPredicted RBP6.47□□□□□ -1.37
UBE2D3-216ENST00000503742 MT1AP04731 61 aa6.4□□□□□ -1.39
UBE2D3-216ENST00000503742 KRTAP6-1Q3LI64 71 aa6.37□□□□□ -1.39
UBE2D3-216ENST00000503742 NEBP20929 6669 aa6.31□□□□□ -1.4
UBE2D3-216ENST00000503742 LCE3BQ5TA77 95 aa6.24□□□□□ -1.41
UBE2D3-216ENST00000503742 SYNE1Q8NF91 8797 aaKnown RBP6.19□□□□□ -1.42
UBE2D3-216ENST00000503742 KRTAP9-4Q9BYQ2 154 aa6.06□□□□□ -1.44
UBE2D3-216ENST00000503742 KRTAP5-4Q6L8H1 288 aa6□□□□□ -1.45
UBE2D3-216ENST00000503742 KRTAP4-9Q9BYQ8 210 aa5.99□□□□□ -1.45
UBE2D3-216ENST00000503742 KRTAP12-4P60329 112 aa5.97□□□□□ -1.45
UBE2D3-216ENST00000503742 KRTAP4-6Q9BYQ5 205 aa5.87□□□□□ -1.47
UBE2D3-216ENST00000503742 KRTAP6-2Q3LI66 62 aa5.8□□□□□ -1.48
UBE2D3-216ENST00000503742 KRTAP20-1Q3LI63 56 aa5.78□□□□□ -1.48
UBE2D3-216ENST00000503742 LCE4AQ5TA78 99 aa5.78□□□□□ -1.48
UBE2D3-216ENST00000503742 LCE3DQ9BYE3 92 aa5.78□□□□□ -1.48
UBE2D3-216ENST00000503742 MT3P25713 68 aa5.76□□□□□ -1.49
UBE2D3-216ENST00000503742 KRTAP2-2Q9BYT5 123 aa5.75□□□□□ -1.49
UBE2D3-216ENST00000503742 MT4P47944 62 aa5.67□□□□□ -1.5
UBE2D3-216ENST00000503742 LCE3EQ5T5B0 92 aa5.65□□□□□ -1.51
UBE2D3-216ENST00000503742 KRTAP20-2Q3LI61 65 aa5.6□□□□□ -1.51
UBE2D3-216ENST00000503742 LCE1DQ5T752 114 aa5.53□□□□□ -1.52
UBE2D3-216ENST00000503742 KRTAP5-2Q701N4 177 aa5.51□□□□□ -1.53
UBE2D3-216ENST00000503742 HMCN1Q96RW7 5635 aa5.51□□□□□ -1.53
UBE2D3-216ENST00000503742 KRTAP5-3Q6L8H2 238 aa5.4□□□□□ -1.55
UBE2D3-216ENST00000503742 OBSCNQ5VST9 7968 aa5.33□□□□□ -1.56
UBE2D3-216ENST00000503742 PRM1P04553 51 aa5.27□□□□□ -1.57
UBE2D3-216ENST00000503742 KRTAP4-12Q9BQ66 201 aa5.09□□□□□ -1.6
UBE2D3-216ENST00000503742 KRTAP9-9Q9BYP9 154 aa4.98□□□□□ -1.61
UBE2D3-216ENST00000503742 LCE1EQ5T753 118 aa4.93□□□□□ -1.62
UBE2D3-216ENST00000503742 KRTAP4-11Q9BYQ6 195 aa4.76□□□□□ -1.65
UBE2D3-216ENST00000503742 MUC5ACP98088 5654 aa4.74□□□□□ -1.65
UBE2D3-216ENST00000503742 AHNAK2Q8IVF2 5795 aa4.73□□□□□ -1.65
UBE2D3-216ENST00000503742 KRTAP5-1Q6L8H4 278 aa4.73□□□□□ -1.65
UBE2D3-216ENST00000503742 KRTAP5-10Q6L8G5 202 aa4.69□□□□□ -1.66
UBE2D3-216ENST00000503742 GPR98Q8WXG9 6306 aa4.67□□□□□ -1.66
UBE2D3-216ENST00000503742 LCE1BQ5T7P3 118 aa4.64□□□□□ -1.67
UBE2D3-216ENST00000503742 KRTAP4-2Q9BYR5 136 aa4.63□□□□□ -1.67
UBE2D3-216ENST00000503742 LCE1CQ5T751 118 aa4.62□□□□□ -1.67
UBE2D3-216ENST00000503742 KRTAP5-8O75690 187 aa4.6□□□□□ -1.67
UBE2D3-216ENST00000503742 KRTAP5-7Q6L8G8 165 aa4.51□□□□□ -1.69
UBE2D3-216ENST00000503742 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.36□□□□□ -1.71
UBE2D3-216ENST00000503742 KRTAP21-2Q3LI59 83 aa4.18□□□□□ -1.74
UBE2D3-216ENST00000503742 KRTAP5-11Q6L8G4 156 aa4.04□□□□□ -1.76
UBE2D3-216ENST00000503742 MUC5BQ9HC84 5762 aaPredicted RBP3.93□□□□□ -1.78
UBE2D3-216ENST00000503742 LCE1FQ5T754 118 aa3.87□□□□□ -1.79
UBE2D3-216ENST00000503742 KRTAP4-4Q9BYR3 166 aa3.69□□□□□ -1.82
UBE2D3-216ENST00000503742 AHNAKQ09666 5890 aaKnown RBP3.66□□□□□ -1.82
UBE2D3-216ENST00000503742 PHGR1C9JFL3 82 aa3.47□□□□□ -1.85
UBE2D3-216ENST00000503742 KRTAP21-1Q3LI58 79 aa3.4□□□□□ -1.87
UBE2D3-216ENST00000503742 MUC19Q7Z5P9 8384 aa3.14□□□□□ -1.91
UBE2D3-216ENST00000503742 MUC16Q8WXI7 14507 aa2.32□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 59.1 ms