RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 LCE2DQ5TA82 110 aaPredicted RBP4.44□□□□□ -1.7
GAPVD1-220ENST00000497580 MUC12Q9UKN1 5478 aa4.37□□□□□ -1.71
GAPVD1-220ENST00000497580 KRTAP12-4P60329 112 aa4.37□□□□□ -1.71
GAPVD1-220ENST00000497580 KRTAP19-7Q3SYF9 63 aa4.36□□□□□ -1.71
GAPVD1-220ENST00000497580 LOC100996750A0A140TA64 210 aa4.32□□□□□ -1.72
GAPVD1-220ENST00000497580 MT1LQ93083 61 aa4.29□□□□□ -1.72
GAPVD1-220ENST00000497580 KRTAP4-3Q9BYR4 195 aa4.29□□□□□ -1.72
GAPVD1-220ENST00000497580 KRTAP9-2Q9BYQ4 174 aa4.24□□□□□ -1.73
GAPVD1-220ENST00000497580 SSPOA2VEC9 5147 aa4.24□□□□□ -1.73
GAPVD1-220ENST00000497580 MT1GP13640 62 aa4.23□□□□□ -1.73
GAPVD1-220ENST00000497580 MT1EP04732 61 aa4.21□□□□□ -1.74
GAPVD1-220ENST00000497580 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
GAPVD1-220ENST00000497580 KRTAP19-6Q3LI70 58 aa4.11□□□□□ -1.75
GAPVD1-220ENST00000497580 KRTAP4-9Q9BYQ8 210 aa4.11□□□□□ -1.75
GAPVD1-220ENST00000497580 LCE3BQ5TA77 95 aa4.09□□□□□ -1.75
GAPVD1-220ENST00000497580 KRTAP19-4Q3LI73 84 aa4.01□□□□□ -1.77
GAPVD1-220ENST00000497580 KRTAP9-6A0A140TA67 174 aa3.98□□□□□ -1.77
GAPVD1-220ENST00000497580 SPRR2FQ96RM1 72 aa3.96□□□□□ -1.77
GAPVD1-220ENST00000497580 KRTAP9-7A8MTY7 169 aa3.95□□□□□ -1.78
GAPVD1-220ENST00000497580 PRM1P04553 51 aa3.94□□□□□ -1.78
GAPVD1-220ENST00000497580 MT1MQ8N339 61 aa3.92□□□□□ -1.78
GAPVD1-220ENST00000497580 MACF1Q9UPN3 7388 aaKnown RBP3.9□□□□□ -1.78
GAPVD1-220ENST00000497580 KRTAP19-3Q7Z4W3 81 aa3.88□□□□□ -1.79
GAPVD1-220ENST00000497580 MDN1Q9NU22 5596 aa3.86□□□□□ -1.79
GAPVD1-220ENST00000497580 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.79
GAPVD1-220ENST00000497580 LCE3EQ5T5B0 92 aa3.81□□□□□ -1.8
GAPVD1-220ENST00000497580 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.79□□□□□ -1.8
GAPVD1-220ENST00000497580 KRTAP5-5Q701N2 237 aaPredicted RBP3.74□□□□□ -1.81
GAPVD1-220ENST00000497580 KRTAP5-9P26371 169 aa3.73□□□□□ -1.81
GAPVD1-220ENST00000497580 KRTAP6-1Q3LI64 71 aa3.72□□□□□ -1.81
GAPVD1-220ENST00000497580 KRTAP6-3Q3LI67 103 aa3.68□□□□□ -1.82
GAPVD1-220ENST00000497580 MT1AP04731 61 aa3.67□□□□□ -1.82
GAPVD1-220ENST00000497580 KRTAP6-2Q3LI66 62 aa3.63□□□□□ -1.83
GAPVD1-220ENST00000497580 LCE5AQ5TCM9 118 aa3.62□□□□□ -1.83
GAPVD1-220ENST00000497580 LCE1AQ5T7P2 110 aa3.59□□□□□ -1.83
GAPVD1-220ENST00000497580 SPRR2EP22531 72 aa3.49□□□□□ -1.85
GAPVD1-220ENST00000497580 SPRR2BP35325 72 aa3.49□□□□□ -1.85
GAPVD1-220ENST00000497580 SPRR2AP35326 72 aa3.49□□□□□ -1.85
GAPVD1-220ENST00000497580 NEBP20929 6669 aa3.49□□□□□ -1.85
GAPVD1-220ENST00000497580 KRTAP2-2Q9BYT5 123 aa3.43□□□□□ -1.86
GAPVD1-220ENST00000497580 LCE1EQ5T753 118 aa3.39□□□□□ -1.87
GAPVD1-220ENST00000497580 SPRR2DP22532 72 aa3.3□□□□□ -1.88
GAPVD1-220ENST00000497580 KRTAP9-4Q9BYQ2 154 aa3.29□□□□□ -1.88
GAPVD1-220ENST00000497580 LCE1DQ5T752 114 aa3.22□□□□□ -1.89
GAPVD1-220ENST00000497580 MT3P25713 68 aa3.2□□□□□ -1.9
GAPVD1-220ENST00000497580 KRTAP20-1Q3LI63 56 aa3.15□□□□□ -1.9
GAPVD1-220ENST00000497580 MT4P47944 62 aa3.14□□□□□ -1.91
GAPVD1-220ENST00000497580 KRTAP5-4Q6L8H1 288 aa3.11□□□□□ -1.91
GAPVD1-220ENST00000497580 KRTAP4-6Q9BYQ5 205 aa3□□□□□ -1.93
GAPVD1-220ENST00000497580 KRTAP4-11Q9BYQ6 195 aa2.99□□□□□ -1.93
GAPVD1-220ENST00000497580 LCE4AQ5TA78 99 aa2.96□□□□□ -1.94
GAPVD1-220ENST00000497580 MUC19Q7Z5P9 8384 aa2.95□□□□□ -1.94
GAPVD1-220ENST00000497580 LCE1BQ5T7P3 118 aa2.92□□□□□ -1.94
GAPVD1-220ENST00000497580 HMCN1Q96RW7 5635 aa2.86□□□□□ -1.95
GAPVD1-220ENST00000497580 MUC5ACP98088 5654 aa2.84□□□□□ -1.95
GAPVD1-220ENST00000497580 KRTAP5-3Q6L8H2 238 aa2.81□□□□□ -1.96
GAPVD1-220ENST00000497580 KRTAP5-2Q701N4 177 aa2.8□□□□□ -1.96
GAPVD1-220ENST00000497580 KRTAP20-2Q3LI61 65 aa2.79□□□□□ -1.96
GAPVD1-220ENST00000497580 AHNAK2Q8IVF2 5795 aa2.66□□□□□ -1.98
GAPVD1-220ENST00000497580 KRTAP5-10Q6L8G5 202 aa2.66□□□□□ -1.98
GAPVD1-220ENST00000497580 LCE1FQ5T754 118 aa2.65□□□□□ -1.99
GAPVD1-220ENST00000497580 KRTAP4-4Q9BYR3 166 aa2.51□□□□□ -2.01
GAPVD1-220ENST00000497580 KRTAP5-7Q6L8G8 165 aa2.48□□□□□ -2.01
GAPVD1-220ENST00000497580 KRTAP5-8O75690 187 aa2.44□□□□□ -2.02
GAPVD1-220ENST00000497580 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
GAPVD1-220ENST00000497580 MUC5BQ9HC84 5762 aaPredicted RBP2.36□□□□□ -2.03
GAPVD1-220ENST00000497580 GPR98Q8WXG9 6306 aa2.36□□□□□ -2.03
GAPVD1-220ENST00000497580 KRTAP21-1Q3LI58 79 aa2.33□□□□□ -2.04
GAPVD1-220ENST00000497580 KRTAP4-2Q9BYR5 136 aa2.32□□□□□ -2.04
GAPVD1-220ENST00000497580 KRTAP4-12Q9BQ66 201 aa2.29□□□□□ -2.04
GAPVD1-220ENST00000497580 LCE1CQ5T751 118 aa2.29□□□□□ -2.04
GAPVD1-220ENST00000497580 KRTAP21-2Q3LI59 83 aa2.28□□□□□ -2.05
GAPVD1-220ENST00000497580 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.16□□□□□ -2.06
GAPVD1-220ENST00000497580 KRTAP9-9Q9BYP9 154 aa2.09□□□□□ -2.08
GAPVD1-220ENST00000497580 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
GAPVD1-220ENST00000497580 KRTAP5-11Q6L8G4 156 aa2□□□□□ -2.09
GAPVD1-220ENST00000497580 PHGR1C9JFL3 82 aa1.72□□□□□ -2.13
GAPVD1-220ENST00000497580 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 49.7 ms