RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, human

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRD9-208	ENST00000489816	LOC100996750	A0A140TA64	210 aa		5.34	□□□□□ -1.55
BRD9-208	ENST00000489816	CRCT1	Q9UGL9	99 aa		5.33	□□□□□ -1.56
BRD9-208	ENST00000489816	KRTAP19-6	Q3LI70	58 aa		5.32	□□□□□ -1.56
BRD9-208	ENST00000489816	INE1	O15225	51 aa		5.31	□□□□□ -1.56
BRD9-208	ENST00000489816	MT1G	P13640	62 aa		5.24	□□□□□ -1.57
BRD9-208	ENST00000489816	MACF1	Q9UPN3	7388 aa	Known RBP	5.21	□□□□□ -1.58
BRD9-208	ENST00000489816	SYNE1	Q8NF91	8797 aa	Known RBP	5.19	□□□□□ -1.58
BRD9-208	ENST00000489816	KRTAP2-3	P0C7H8	128 aa		5.17	□□□□□ -1.58
BRD9-208	ENST00000489816	KRTAP2-4	Q9BYR9	128 aa		5.17	□□□□□ -1.58
BRD9-208	ENST00000489816	KRTAP2-1	Q9BYU5	128 aa		5.17	□□□□□ -1.58
BRD9-208	ENST00000489816	SYNE2	Q8WXH0	6885 aa	Known RBP	5.16	□□□□□ -1.58
BRD9-208	ENST00000489816	SPRR2F	Q96RM1	72 aa		5.12	□□□□□ -1.59
BRD9-208	ENST00000489816	MT1M	Q8N339	61 aa		5.1	□□□□□ -1.59
BRD9-208	ENST00000489816	KRTAP19-3	Q7Z4W3	81 aa		5.09	□□□□□ -1.59
BRD9-208	ENST00000489816	MDN1	Q9NU22	5596 aa		5.04	□□□□□ -1.6
BRD9-208	ENST00000489816	OBSCN	Q5VST9	7968 aa		5	□□□□□ -1.61
BRD9-208	ENST00000489816	KRTAP19-4	Q3LI73	84 aa		4.98	□□□□□ -1.61
BRD9-208	ENST00000489816	LCE5A	Q5TCM9	118 aa		4.9	□□□□□ -1.63
BRD9-208	ENST00000489816	LCE3B	Q5TA77	95 aa		4.86	□□□□□ -1.63
BRD9-208	ENST00000489816	KRTAP4-9	Q9BYQ8	210 aa		4.83	□□□□□ -1.64
BRD9-208	ENST00000489816	KRTAP12-4	P60329	112 aa		4.76	□□□□□ -1.65
BRD9-208	ENST00000489816	KRTAP9-2	Q9BYQ4	174 aa		4.76	□□□□□ -1.65
BRD9-208	ENST00000489816	KRTAP6-1	Q3LI64	71 aa		4.69	□□□□□ -1.66
BRD9-208	ENST00000489816	LCE1A	Q5T7P2	110 aa		4.65	□□□□□ -1.66
BRD9-208	ENST00000489816	SPRR2E	P22531	72 aa		4.62	□□□□□ -1.67
BRD9-208	ENST00000489816	SPRR2B	P35325	72 aa		4.62	□□□□□ -1.67
BRD9-208	ENST00000489816	SPRR2A	P35326	72 aa		4.62	□□□□□ -1.67
BRD9-208	ENST00000489816	MT1A	P04731	61 aa		4.49	□□□□□ -1.69
BRD9-208	ENST00000489816	KRTAP5-9	P26371	169 aa		4.49	□□□□□ -1.69
BRD9-208	ENST00000489816	LCE3D	Q9BYE3	92 aa		4.43	□□□□□ -1.7
BRD9-208	ENST00000489816	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.4	□□□□□ -1.7
BRD9-208	ENST00000489816	SPRR2D	P22532	72 aa		4.39	□□□□□ -1.71
BRD9-208	ENST00000489816	KRTAP9-7	A8MTY7	169 aa		4.33	□□□□□ -1.72
BRD9-208	ENST00000489816	LCE3E	Q5T5B0	92 aa		4.32	□□□□□ -1.72
BRD9-208	ENST00000489816	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.26	□□□□□ -1.73
BRD9-208	ENST00000489816	KRTAP9-4	Q9BYQ2	154 aa		4.25	□□□□□ -1.73
BRD9-208	ENST00000489816	KRTAP6-2	Q3LI66	62 aa		4.24	□□□□□ -1.73
BRD9-208	ENST00000489816	PRM1	P04553	51 aa		4.21	□□□□□ -1.74
BRD9-208	ENST00000489816	KRTAP6-3	Q3LI67	103 aa		4.14	□□□□□ -1.75
BRD9-208	ENST00000489816	MT3	P25713	68 aa		4.07	□□□□□ -1.76
BRD9-208	ENST00000489816	KRTAP9-6	A0A140TA67	174 aa		4.05	□□□□□ -1.76
BRD9-208	ENST00000489816	MT4	P47944	62 aa		4.04	□□□□□ -1.76
BRD9-208	ENST00000489816	KRTAP4-6	Q9BYQ5	205 aa		4.01	□□□□□ -1.77
BRD9-208	ENST00000489816	NEB	P20929	6669 aa		3.98	□□□□□ -1.77
BRD9-208	ENST00000489816	KRTAP5-4	Q6L8H1	288 aa		3.85	□□□□□ -1.79
BRD9-208	ENST00000489816	HMCN1	Q96RW7	5635 aa		3.82	□□□□□ -1.8
BRD9-208	ENST00000489816	KRTAP20-2	Q3LI61	65 aa		3.75	□□□□□ -1.81
BRD9-208	ENST00000489816	LCE1D	Q5T752	114 aa		3.68	□□□□□ -1.82
BRD9-208	ENST00000489816	LCE4A	Q5TA78	99 aa		3.61	□□□□□ -1.83
BRD9-208	ENST00000489816	KRTAP2-2	Q9BYT5	123 aa		3.59	□□□□□ -1.83
BRD9-208	ENST00000489816	KRTAP5-2	Q701N4	177 aa		3.57	□□□□□ -1.84
BRD9-208	ENST00000489816	MUC5AC	P98088	5654 aa		3.57	□□□□□ -1.84
BRD9-208	ENST00000489816	LCE1B	Q5T7P3	118 aa		3.53	□□□□□ -1.84
BRD9-208	ENST00000489816	KRTAP5-3	Q6L8H2	238 aa		3.5	□□□□□ -1.85
BRD9-208	ENST00000489816	KRTAP20-1	Q3LI63	56 aa		3.45	□□□□□ -1.86
BRD9-208	ENST00000489816	KRTAP9-9	Q9BYP9	154 aa		3.33	□□□□□ -1.88
BRD9-208	ENST00000489816	KRTAP4-11	Q9BYQ6	195 aa		3.26	□□□□□ -1.89
BRD9-208	ENST00000489816	LCE1E	Q5T753	118 aa		3.2	□□□□□ -1.9
BRD9-208	ENST00000489816	KRTAP5-10	Q6L8G5	202 aa		3.19	□□□□□ -1.9
BRD9-208	ENST00000489816	KRTAP4-2	Q9BYR5	136 aa		3.18	□□□□□ -1.9
BRD9-208	ENST00000489816	MUC19	Q7Z5P9	8384 aa		3.17	□□□□□ -1.9
BRD9-208	ENST00000489816	KRTAP5-1	Q6L8H4	278 aa		3.14	□□□□□ -1.91
BRD9-208	ENST00000489816	LCE1C	Q5T751	118 aa		3.07	□□□□□ -1.92
BRD9-208	ENST00000489816	LCE1F	Q5T754	118 aa		3.07	□□□□□ -1.92
BRD9-208	ENST00000489816	AHNAK2	Q8IVF2	5795 aa		3.03	□□□□□ -1.92
BRD9-208	ENST00000489816	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.99	□□□□□ -1.93
BRD9-208	ENST00000489816	KRTAP4-4	Q9BYR3	166 aa		2.99	□□□□□ -1.93
BRD9-208	ENST00000489816	KRTAP5-8	O75690	187 aa		2.96	□□□□□ -1.94
BRD9-208	ENST00000489816	KRTAP21-2	Q3LI59	83 aa		2.96	□□□□□ -1.94
BRD9-208	ENST00000489816	KRTAP4-12	Q9BQ66	201 aa		2.92	□□□□□ -1.94
BRD9-208	ENST00000489816	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.8	□□□□□ -1.96
BRD9-208	ENST00000489816	KRTAP5-7	Q6L8G8	165 aa		2.71	□□□□□ -1.98
BRD9-208	ENST00000489816	GPR98	Q8WXG9	6306 aa		2.64	□□□□□ -1.99
BRD9-208	ENST00000489816	KRTAP5-11	Q6L8G4	156 aa		2.62	□□□□□ -1.99
BRD9-208	ENST00000489816	KRTAP21-1	Q3LI58	79 aa		2.47	□□□□□ -2.01
BRD9-208	ENST00000489816	PHGR1	C9JFL3	82 aa		2.31	□□□□□ -2.04
BRD9-208	ENST00000489816	AHNAK	Q09666	5890 aa	Known RBP	2.22	□□□□□ -2.05
BRD9-208	ENST00000489816	MUC16	Q8WXI7	14507 aa		1.54	□□□□□ -2.16

Retrieved 78 of 20,778 RNA–protein pairs in 13.6 ms