RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 NEBP20929 6669 aa7.24□□□□□ -1.25
CCM2-216ENST00000488727 MDN1Q9NU22 5596 aa7.23□□□□□ -1.25
CCM2-216ENST00000488727 KRTAP19-7Q3SYF9 63 aa7.22□□□□□ -1.25
CCM2-216ENST00000488727 KRTAP12-3P60328 96 aa7.21□□□□□ -1.26
CCM2-216ENST00000488727 SPRR2EP22531 72 aa7.18□□□□□ -1.26
CCM2-216ENST00000488727 SPRR2BP35325 72 aa7.18□□□□□ -1.26
CCM2-216ENST00000488727 SPRR2AP35326 72 aa7.18□□□□□ -1.26
CCM2-216ENST00000488727 LCE1AQ5T7P2 110 aa7.16□□□□□ -1.26
CCM2-216ENST00000488727 KRTAP19-5Q3LI72 72 aa7.15□□□□□ -1.27
CCM2-216ENST00000488727 MT1EP04732 61 aa7.12□□□□□ -1.27
CCM2-216ENST00000488727 KRTAP19-3Q7Z4W3 81 aa6.95□□□□□ -1.3
CCM2-216ENST00000488727 SPRR2DP22532 72 aa6.93□□□□□ -1.3
CCM2-216ENST00000488727 LCE5AQ5TCM9 118 aa6.91□□□□□ -1.3
CCM2-216ENST00000488727 MT1LQ93083 61 aa6.89□□□□□ -1.31
CCM2-216ENST00000488727 KRTAP20-1Q3LI63 56 aa6.85□□□□□ -1.31
CCM2-216ENST00000488727 MT1GP13640 62 aa6.83□□□□□ -1.32
CCM2-216ENST00000488727 KRTAP2-3P0C7H8 128 aa6.79□□□□□ -1.32
CCM2-216ENST00000488727 KRTAP2-4Q9BYR9 128 aa6.79□□□□□ -1.32
CCM2-216ENST00000488727 LCE3CQ5T5A8 94 aa6.78□□□□□ -1.32
CCM2-216ENST00000488727 MT1MQ8N339 61 aa6.74□□□□□ -1.33
CCM2-216ENST00000488727 KRTAP19-4Q3LI73 84 aa6.72□□□□□ -1.33
CCM2-216ENST00000488727 LCE3BQ5TA77 95 aa6.7□□□□□ -1.34
CCM2-216ENST00000488727 A0A0A0MQY5 61 aa6.69□□□□□ -1.34
CCM2-216ENST00000488727 KRTAP4-7Q9BYR0 210 aa6.62□□□□□ -1.35
CCM2-216ENST00000488727 KRTAP2-2Q9BYT5 123 aa6.61□□□□□ -1.35
CCM2-216ENST00000488727 KRTAP2-1Q9BYU5 128 aa6.61□□□□□ -1.35
CCM2-216ENST00000488727 DSTQ03001 7570 aaKnown RBP6.6□□□□□ -1.35
CCM2-216ENST00000488727 KRTAP4-3Q9BYR4 195 aa6.6□□□□□ -1.35
CCM2-216ENST00000488727 KRTAP9-6A8MVA2 160 aa6.45□□□□□ -1.38
CCM2-216ENST00000488727 LOC100996750A0A140TA64 210 aa6.24□□□□□ -1.41
CCM2-216ENST00000488727 INE1O15225 51 aa6.2□□□□□ -1.42
CCM2-216ENST00000488727 KRTAP5-4Q6L8H1 288 aa6.15□□□□□ -1.42
CCM2-216ENST00000488727 KRTAP5-5Q701N2 237 aaPredicted RBP6.15□□□□□ -1.42
CCM2-216ENST00000488727 LCE4AQ5TA78 99 aa6.13□□□□□ -1.43
CCM2-216ENST00000488727 KRTAP4-9Q9BYQ8 210 aa6.13□□□□□ -1.43
CCM2-216ENST00000488727 LCE1DQ5T752 114 aa6.04□□□□□ -1.44
CCM2-216ENST00000488727 MT4P47944 62 aa6.03□□□□□ -1.44
CCM2-216ENST00000488727 KRTAP4-6Q9BYQ5 205 aa5.94□□□□□ -1.46
CCM2-216ENST00000488727 HMCN1Q96RW7 5635 aa5.91□□□□□ -1.46
CCM2-216ENST00000488727 MT1AP04731 61 aa5.85□□□□□ -1.47
CCM2-216ENST00000488727 KRTAP6-1Q3LI64 71 aa5.82□□□□□ -1.48
CCM2-216ENST00000488727 SYNE1Q8NF91 8797 aaKnown RBP5.82□□□□□ -1.48
CCM2-216ENST00000488727 KRTAP12-4P60329 112 aa5.81□□□□□ -1.48
CCM2-216ENST00000488727 KRTAP20-2Q3LI61 65 aa5.77□□□□□ -1.49
CCM2-216ENST00000488727 KRTAP9-4Q9BYQ2 154 aa5.6□□□□□ -1.51
CCM2-216ENST00000488727 KRTAP5-3Q6L8H2 238 aa5.6□□□□□ -1.51
CCM2-216ENST00000488727 AHNAK2Q8IVF2 5795 aa5.48□□□□□ -1.53
CCM2-216ENST00000488727 KRTAP5-2Q701N4 177 aa5.47□□□□□ -1.53
CCM2-216ENST00000488727 KRTAP6-2Q3LI66 62 aa5.45□□□□□ -1.54
CCM2-216ENST00000488727 GPR98Q8WXG9 6306 aa5.41□□□□□ -1.54
CCM2-216ENST00000488727 KRTAP5-10Q6L8G5 202 aa5.36□□□□□ -1.55
CCM2-216ENST00000488727 MT3P25713 68 aa5.31□□□□□ -1.56
CCM2-216ENST00000488727 LCE3DQ9BYE3 92 aa5.15□□□□□ -1.58
CCM2-216ENST00000488727 KRTAP4-11Q9BYQ6 195 aa5.14□□□□□ -1.59
CCM2-216ENST00000488727 OBSCNQ5VST9 7968 aa5.08□□□□□ -1.6
CCM2-216ENST00000488727 LCE3EQ5T5B0 92 aa5.08□□□□□ -1.6
CCM2-216ENST00000488727 KRTAP5-7Q6L8G8 165 aa5.06□□□□□ -1.6
CCM2-216ENST00000488727 KRTAP5-8O75690 187 aa4.97□□□□□ -1.61
CCM2-216ENST00000488727 KRTAP5-1Q6L8H4 278 aa4.83□□□□□ -1.64
CCM2-216ENST00000488727 LCE1EQ5T753 118 aa4.76□□□□□ -1.65
CCM2-216ENST00000488727 PRM1P04553 51 aa4.66□□□□□ -1.66
CCM2-216ENST00000488727 MUC5ACP98088 5654 aa4.62□□□□□ -1.67
CCM2-216ENST00000488727 KRTAP9-9Q9BYP9 154 aa4.58□□□□□ -1.68
CCM2-216ENST00000488727 KRTAP4-2Q9BYR5 136 aa4.49□□□□□ -1.69
CCM2-216ENST00000488727 LCE1BQ5T7P3 118 aa4.46□□□□□ -1.69
CCM2-216ENST00000488727 MUC5BQ9HC84 5762 aaPredicted RBP4.44□□□□□ -1.7
CCM2-216ENST00000488727 LCE1CQ5T751 118 aa4.43□□□□□ -1.7
CCM2-216ENST00000488727 KRTAP4-12Q9BQ66 201 aa4.36□□□□□ -1.71
CCM2-216ENST00000488727 AHNAKQ09666 5890 aaKnown RBP4.31□□□□□ -1.72
CCM2-216ENST00000488727 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.09□□□□□ -1.75
CCM2-216ENST00000488727 KRTAP5-11Q6L8G4 156 aa3.98□□□□□ -1.77
CCM2-216ENST00000488727 KRTAP21-2Q3LI59 83 aa3.83□□□□□ -1.8
CCM2-216ENST00000488727 LCE1FQ5T754 118 aa3.72□□□□□ -1.81
CCM2-216ENST00000488727 KRTAP4-4Q9BYR3 166 aa3.44□□□□□ -1.86
CCM2-216ENST00000488727 PHGR1C9JFL3 82 aa3.42□□□□□ -1.86
CCM2-216ENST00000488727 MUC19Q7Z5P9 8384 aa3.09□□□□□ -1.92
CCM2-216ENST00000488727 KRTAP21-1Q3LI58 79 aa2.96□□□□□ -1.94
CCM2-216ENST00000488727 MUC16Q8WXI7 14507 aa2.19□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 9.4 ms