RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 FCGBPQ9Y6R7 5405 aaPredicted RBP9.01□□□□□ -0.97
HLA-C-208ENST00000487245 KRTAP4-7Q9BYR0 210 aa8.94□□□□□ -0.98
HLA-C-208ENST00000487245 KRTAP2-3P0C7H8 128 aa8.91□□□□□ -0.98
HLA-C-208ENST00000487245 KRTAP2-4Q9BYR9 128 aa8.91□□□□□ -0.98
HLA-C-208ENST00000487245 KRTAP2-1Q9BYU5 128 aa8.91□□□□□ -0.98
HLA-C-208ENST00000487245 KRTAP9-6A0A140TA67 174 aa8.77□□□□□ -1.01
HLA-C-208ENST00000487245 MT1GP13640 62 aa8.66□□□□□ -1.02
HLA-C-208ENST00000487245 KRTAP19-3Q7Z4W3 81 aa8.66□□□□□ -1.02
HLA-C-208ENST00000487245 MT1MQ8N339 61 aa8.58□□□□□ -1.04
HLA-C-208ENST00000487245 MACF1Q9UPN3 7388 aaKnown RBP8.55□□□□□ -1.04
HLA-C-208ENST00000487245 KRTAP4-3Q9BYR4 195 aa8.47□□□□□ -1.05
HLA-C-208ENST00000487245 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.43□□□□□ -1.06
HLA-C-208ENST00000487245 SPRR2FQ96RM1 72 aa8.42□□□□□ -1.06
HLA-C-208ENST00000487245 LCE5AQ5TCM9 118 aa8.39□□□□□ -1.07
HLA-C-208ENST00000487245 LOC100996750A0A140TA64 210 aa8.36□□□□□ -1.07
HLA-C-208ENST00000487245 SYNE2Q8WXH0 6885 aaKnown RBP8.33□□□□□ -1.08
HLA-C-208ENST00000487245 KRTAP5-9P26371 169 aa8.28□□□□□ -1.08
HLA-C-208ENST00000487245 MUC12Q9UKN1 5478 aa8.25□□□□□ -1.09
HLA-C-208ENST00000487245 KRTAP6-3Q3LI67 103 aa8.21□□□□□ -1.09
HLA-C-208ENST00000487245 KRTAP9-7A8MTY7 169 aa8.02□□□□□ -1.13
HLA-C-208ENST00000487245 LCE1AQ5T7P2 110 aa7.96□□□□□ -1.13
HLA-C-208ENST00000487245 SPRR2EP22531 72 aa7.92□□□□□ -1.14
HLA-C-208ENST00000487245 SPRR2BP35325 72 aa7.92□□□□□ -1.14
HLA-C-208ENST00000487245 SPRR2AP35326 72 aa7.92□□□□□ -1.14
HLA-C-208ENST00000487245 MDN1Q9NU22 5596 aa7.9□□□□□ -1.14
HLA-C-208ENST00000487245 MT1AP04731 61 aa7.74□□□□□ -1.17
HLA-C-208ENST00000487245 KRTAP12-4P60329 112 aa7.73□□□□□ -1.17
HLA-C-208ENST00000487245 DSTQ03001 7570 aaKnown RBP7.69□□□□□ -1.18
HLA-C-208ENST00000487245 KRTAP6-1Q3LI64 71 aa7.67□□□□□ -1.18
HLA-C-208ENST00000487245 LCE3BQ5TA77 95 aa7.66□□□□□ -1.18
HLA-C-208ENST00000487245 SPRR2DP22532 72 aa7.64□□□□□ -1.19
HLA-C-208ENST00000487245 KRTAP5-5Q701N2 237 aaPredicted RBP7.64□□□□□ -1.19
HLA-C-208ENST00000487245 NEBP20929 6669 aa7.62□□□□□ -1.19
HLA-C-208ENST00000487245 KRTAP4-9Q9BYQ8 210 aa7.43□□□□□ -1.22
HLA-C-208ENST00000487245 LCE3DQ9BYE3 92 aa7.32□□□□□ -1.24
HLA-C-208ENST00000487245 KRTAP9-4Q9BYQ2 154 aa7.3□□□□□ -1.24
HLA-C-208ENST00000487245 LCE3EQ5T5B0 92 aa7.25□□□□□ -1.25
HLA-C-208ENST00000487245 SYNE1Q8NF91 8797 aaKnown RBP7.18□□□□□ -1.26
HLA-C-208ENST00000487245 KRTAP20-1Q3LI63 56 aa7.11□□□□□ -1.27
HLA-C-208ENST00000487245 KRTAP2-2Q9BYT5 123 aa7.04□□□□□ -1.28
HLA-C-208ENST00000487245 MT3P25713 68 aa6.99□□□□□ -1.29
HLA-C-208ENST00000487245 KRTAP6-2Q3LI66 62 aa6.93□□□□□ -1.3
HLA-C-208ENST00000487245 KRTAP5-4Q6L8H1 288 aa6.92□□□□□ -1.3
HLA-C-208ENST00000487245 PRM1P04553 51 aa6.82□□□□□ -1.32
HLA-C-208ENST00000487245 LCE4AQ5TA78 99 aa6.8□□□□□ -1.32
HLA-C-208ENST00000487245 MT4P47944 62 aa6.62□□□□□ -1.35
HLA-C-208ENST00000487245 KRTAP4-6Q9BYQ5 205 aa6.56□□□□□ -1.36
HLA-C-208ENST00000487245 LCE1DQ5T752 114 aa6.54□□□□□ -1.36
HLA-C-208ENST00000487245 KRTAP20-2Q3LI61 65 aa6.45□□□□□ -1.38
HLA-C-208ENST00000487245 KRTAP5-2Q701N4 177 aa6.41□□□□□ -1.38
HLA-C-208ENST00000487245 HMCN1Q96RW7 5635 aa6.41□□□□□ -1.38
HLA-C-208ENST00000487245 OBSCNQ5VST9 7968 aa6.25□□□□□ -1.41
HLA-C-208ENST00000487245 KRTAP5-3Q6L8H2 238 aa6.2□□□□□ -1.42
HLA-C-208ENST00000487245 LCE1EQ5T753 118 aa5.85□□□□□ -1.47
HLA-C-208ENST00000487245 AHNAK2Q8IVF2 5795 aa5.74□□□□□ -1.49
HLA-C-208ENST00000487245 KRTAP4-11Q9BYQ6 195 aa5.62□□□□□ -1.51
HLA-C-208ENST00000487245 MUC5ACP98088 5654 aa5.62□□□□□ -1.51
HLA-C-208ENST00000487245 LCE1BQ5T7P3 118 aa5.54□□□□□ -1.52
HLA-C-208ENST00000487245 KRTAP5-10Q6L8G5 202 aa5.51□□□□□ -1.53
HLA-C-208ENST00000487245 LCE1CQ5T751 118 aa5.47□□□□□ -1.53
HLA-C-208ENST00000487245 KRTAP5-1Q6L8H4 278 aa5.43□□□□□ -1.54
HLA-C-208ENST00000487245 KRTAP4-2Q9BYR5 136 aa5.42□□□□□ -1.54
HLA-C-208ENST00000487245 KRTAP5-8O75690 187 aa5.41□□□□□ -1.54
HLA-C-208ENST00000487245 GPR98Q8WXG9 6306 aa5.28□□□□□ -1.56
HLA-C-208ENST00000487245 KRTAP5-7Q6L8G8 165 aa5.22□□□□□ -1.57
HLA-C-208ENST00000487245 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.18□□□□□ -1.58
HLA-C-208ENST00000487245 KRTAP21-2Q3LI59 83 aa4.99□□□□□ -1.61
HLA-C-208ENST00000487245 KRTAP9-9Q9BYP9 154 aa4.92□□□□□ -1.62
HLA-C-208ENST00000487245 KRTAP5-11Q6L8G4 156 aa4.74□□□□□ -1.65
HLA-C-208ENST00000487245 MUC5BQ9HC84 5762 aaPredicted RBP4.63□□□□□ -1.67
HLA-C-208ENST00000487245 KRTAP4-4Q9BYR3 166 aa4.41□□□□□ -1.7
HLA-C-208ENST00000487245 AHNAKQ09666 5890 aaKnown RBP4.39□□□□□ -1.71
HLA-C-208ENST00000487245 KRTAP21-1Q3LI58 79 aa4.38□□□□□ -1.71
HLA-C-208ENST00000487245 KRTAP4-12Q9BQ66 201 aa4.31□□□□□ -1.72
HLA-C-208ENST00000487245 LCE1FQ5T754 118 aa4.15□□□□□ -1.74
HLA-C-208ENST00000487245 PHGR1C9JFL3 82 aa4.06□□□□□ -1.76
HLA-C-208ENST00000487245 MUC19Q7Z5P9 8384 aa3.82□□□□□ -1.8
HLA-C-208ENST00000487245 MUC16Q8WXI7 14507 aa2.73□□□□□ -1.97
Retrieved 78 of 20,778 RNA–protein pairs in 9.7 ms