RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 KRTAP4-1Q9BYQ7 146 aa1.7□□□□□ -2.14
PTCD3-216ENST00000487043 KRTAP12-1P59990 96 aa1.69□□□□□ -2.14
PTCD3-216ENST00000487043 KRTAP12-3P60328 96 aa1.69□□□□□ -2.14
PTCD3-216ENST00000487043 CSAG1Q6PB30 78 aa1.69□□□□□ -2.14
PTCD3-216ENST00000487043 KRTAP13-4Q3LI77 160 aa1.67□□□□□ -2.14
PTCD3-216ENST00000487043 UBR4Q5T4S7 5183 aa1.67□□□□□ -2.14
PTCD3-216ENST00000487043 KRTAP19-2Q3LHN2 52 aa1.66□□□□□ -2.14
PTCD3-216ENST00000487043 H1FX-AS1Q4G0G2 97 aa1.66□□□□□ -2.14
PTCD3-216ENST00000487043 ROMO1P60602 79 aa1.65□□□□□ -2.15
PTCD3-216ENST00000487043 MUC2Q02817 5179 aa1.65□□□□□ -2.15
PTCD3-216ENST00000487043 RNF213Q63HN8 5207 aa1.62□□□□□ -2.15
PTCD3-216ENST00000487043 S4R3F8 94 aa1.62□□□□□ -2.15
PTCD3-216ENST00000487043 FAT4Q6V0I7 4981 aa1.61□□□□□ -2.15
PTCD3-216ENST00000487043 MT1HP80294 61 aa1.59□□□□□ -2.15
PTCD3-216ENST00000487043 H0YAA0 97 aa1.58□□□□□ -2.16
PTCD3-216ENST00000487043 M0R2T5 61 aa1.57□□□□□ -2.16
PTCD3-216ENST00000487043 CRIPTQ9P021 101 aa1.57□□□□□ -2.16
PTCD3-216ENST00000487043 KRTAP12-4P60329 112 aa1.56□□□□□ -2.16
PTCD3-216ENST00000487043 KRTAP21-2Q3LI59 83 aa1.56□□□□□ -2.16
PTCD3-216ENST00000487043 FLGP20930 4061 aaPredicted RBP1.55□□□□□ -2.16
PTCD3-216ENST00000487043 MT2AP02795 61 aa1.53□□□□□ -2.16
PTCD3-216ENST00000487043 M0QZ58 72 aa1.52□□□□□ -2.17
PTCD3-216ENST00000487043 MT1FP04733 61 aa1.51□□□□□ -2.17
PTCD3-216ENST00000487043 SPRR2GQ9BYE4 73 aa1.49□□□□□ -2.17
PTCD3-216ENST00000487043 A0A0D9SG42 100 aa1.46□□□□□ -2.18
PTCD3-216ENST00000487043 KRTAP19-8Q3LI54 63 aa1.46□□□□□ -2.18
PTCD3-216ENST00000487043 FSIP2Q5CZC0 6907 aa1.45□□□□□ -2.18
PTCD3-216ENST00000487043 PLAC4Q8WY50 150 aa1.44□□□□□ -2.18
PTCD3-216ENST00000487043 MT1BP07438 61 aa1.43□□□□□ -2.18
PTCD3-216ENST00000487043 C10orf95Q9H7T3 257 aa1.43□□□□□ -2.18
PTCD3-216ENST00000487043 USH2AO75445 5202 aa1.39□□□□□ -2.19
PTCD3-216ENST00000487043 SSPOA2VEC9 5147 aa1.37□□□□□ -2.19
PTCD3-216ENST00000487043 MT1XP80297 61 aa1.37□□□□□ -2.19
PTCD3-216ENST00000487043 KRTAP19-6Q3LI70 58 aa1.37□□□□□ -2.19
PTCD3-216ENST00000487043 CRCT1Q9UGL9 99 aa1.37□□□□□ -2.19
PTCD3-216ENST00000487043 INE1O15225 51 aa1.36□□□□□ -2.19
PTCD3-216ENST00000487043 TNP1P09430 55 aa1.34□□□□□ -2.19
PTCD3-216ENST00000487043 SYNE2Q8WXH0 6885 aaKnown RBP1.31□□□□□ -2.2
PTCD3-216ENST00000487043 MACF1Q9UPN3 7388 aaKnown RBP1.31□□□□□ -2.2
PTCD3-216ENST00000487043 FCGBPQ9Y6R7 5405 aaPredicted RBP1.28□□□□□ -2.2
PTCD3-216ENST00000487043 KRTAP8-1Q8IUC2 63 aa1.27□□□□□ -2.21
PTCD3-216ENST00000487043 KRTAP19-5Q3LI72 72 aa1.23□□□□□ -2.21
PTCD3-216ENST00000487043 KRTAP19-7Q3SYF9 63 aa1.23□□□□□ -2.21
PTCD3-216ENST00000487043 KMT2DO14686 5537 aa1.22□□□□□ -2.21
PTCD3-216ENST00000487043 MT1EP04732 61 aa1.21□□□□□ -2.22
PTCD3-216ENST00000487043 SPRR2FQ96RM1 72 aa1.2□□□□□ -2.22
PTCD3-216ENST00000487043 MT1LQ93083 61 aa1.18□□□□□ -2.22
PTCD3-216ENST00000487043 NEBP20929 6669 aa1.17□□□□□ -2.22
PTCD3-216ENST00000487043 MT1GP13640 62 aa1.17□□□□□ -2.22
PTCD3-216ENST00000487043 KRTAP19-3Q7Z4W3 81 aa1.17□□□□□ -2.22
PTCD3-216ENST00000487043 MUC12Q9UKN1 5478 aa1.15□□□□□ -2.23
PTCD3-216ENST00000487043 SPRR2EP22531 72 aa1.14□□□□□ -2.23
PTCD3-216ENST00000487043 SPRR2BP35325 72 aa1.14□□□□□ -2.23
PTCD3-216ENST00000487043 SPRR2AP35326 72 aa1.14□□□□□ -2.23
PTCD3-216ENST00000487043 MT1MQ8N339 61 aa1.14□□□□□ -2.23
PTCD3-216ENST00000487043 DSTQ03001 7570 aaKnown RBP1.12□□□□□ -2.23
PTCD3-216ENST00000487043 SPRR2DP22532 72 aa1.1□□□□□ -2.23
PTCD3-216ENST00000487043 MDN1Q9NU22 5596 aa1.08□□□□□ -2.24
PTCD3-216ENST00000487043 KRTAP2-3P0C7H8 128 aa1.06□□□□□ -2.24
PTCD3-216ENST00000487043 KRTAP2-4Q9BYR9 128 aa1.06□□□□□ -2.24
PTCD3-216ENST00000487043 SYNE1Q8NF91 8797 aaKnown RBP1.05□□□□□ -2.24
PTCD3-216ENST00000487043 KRTAP2-1Q9BYU5 128 aa1.04□□□□□ -2.24
PTCD3-216ENST00000487043 KRTAP20-1Q3LI63 56 aa1.03□□□□□ -2.24
PTCD3-216ENST00000487043 MT1AP04731 61 aa1.01□□□□□ -2.25
PTCD3-216ENST00000487043 KRTAP6-1Q3LI64 71 aa0.99□□□□□ -2.25
PTCD3-216ENST00000487043 AHNAK2Q8IVF2 5795 aa0.96□□□□□ -2.25
PTCD3-216ENST00000487043 MT4P47944 62 aa0.95□□□□□ -2.26
PTCD3-216ENST00000487043 KRTAP20-2Q3LI61 65 aa0.93□□□□□ -2.26
PTCD3-216ENST00000487043 KRTAP6-2Q3LI66 62 aa0.92□□□□□ -2.26
PTCD3-216ENST00000487043 MUC16Q8WXI7 14507 aa0.81□□□□□ -2.28
PTCD3-216ENST00000487043 GPR98Q8WXG9 6306 aa0.81□□□□□ -2.28
PTCD3-216ENST00000487043 PRM1P04553 51 aa0.81□□□□□ -2.28
PTCD3-216ENST00000487043 KRTAP5-10Q6L8G5 202 aa0.81□□□□□ -2.28
PTCD3-216ENST00000487043 AHNAKQ09666 5890 aaKnown RBP0.76□□□□□ -2.29
PTCD3-216ENST00000487043 MUC5ACP98088 5654 aa0.74□□□□□ -2.29
PTCD3-216ENST00000487043 MUC5BQ9HC84 5762 aaPredicted RBP0.7□□□□□ -2.3
PTCD3-216ENST00000487043 PHGR1C9JFL3 82 aa0.57□□□□□ -2.32
PTCD3-216ENST00000487043 KRTAP21-1Q3LI58 79 aa0.55□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 83.8 ms