RNA–Protein interactions for RNA: ENST00000484855.2

CTSA-207, Transcript of cathepsin A, humanhuman

TSL 1 (best)

Gene CTSA, Length 2,183 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-207ENST00000484855 MUC12Q9UKN1 5478 aa5.83□□□□□ -1.48
CTSA-207ENST00000484855 SPRR2FQ96RM1 72 aa5.82□□□□□ -1.48
CTSA-207ENST00000484855 KRTAP4-7Q9BYR0 210 aa5.79□□□□□ -1.48
CTSA-207ENST00000484855 KRTAP19-3Q7Z4W3 81 aa5.76□□□□□ -1.49
CTSA-207ENST00000484855 SYNE2Q8WXH0 6885 aaKnown RBP5.76□□□□□ -1.49
CTSA-207ENST00000484855 MT1GP13640 62 aa5.7□□□□□ -1.5
CTSA-207ENST00000484855 KRTAP9-6A0A140TA67 174 aa5.68□□□□□ -1.5
CTSA-207ENST00000484855 KRTAP5-9P26371 169 aa5.67□□□□□ -1.5
CTSA-207ENST00000484855 MT1MQ8N339 61 aa5.66□□□□□ -1.5
CTSA-207ENST00000484855 KRTAP9-6A8MVA2 160 aa5.63□□□□□ -1.51
CTSA-207ENST00000484855 LCE5AQ5TCM9 118 aa5.63□□□□□ -1.51
CTSA-207ENST00000484855 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.59□□□□□ -1.51
CTSA-207ENST00000484855 KRTAP4-3Q9BYR4 195 aa5.59□□□□□ -1.51
CTSA-207ENST00000484855 MDN1Q9NU22 5596 aa5.57□□□□□ -1.52
CTSA-207ENST00000484855 LCE1AQ5T7P2 110 aa5.52□□□□□ -1.53
CTSA-207ENST00000484855 KRTAP6-3Q3LI67 103 aa5.49□□□□□ -1.53
CTSA-207ENST00000484855 SPRR2EP22531 72 aa5.48□□□□□ -1.53
CTSA-207ENST00000484855 SPRR2BP35325 72 aa5.48□□□□□ -1.53
CTSA-207ENST00000484855 SPRR2AP35326 72 aa5.48□□□□□ -1.53
CTSA-207ENST00000484855 LOC100996750A0A140TA64 210 aa5.43□□□□□ -1.54
CTSA-207ENST00000484855 DSTQ03001 7570 aaKnown RBP5.39□□□□□ -1.55
CTSA-207ENST00000484855 SPRR2DP22532 72 aa5.28□□□□□ -1.56
CTSA-207ENST00000484855 KRTAP2-3P0C7H8 128 aa5.25□□□□□ -1.57
CTSA-207ENST00000484855 KRTAP2-4Q9BYR9 128 aa5.25□□□□□ -1.57
CTSA-207ENST00000484855 KRTAP2-1Q9BYU5 128 aa5.25□□□□□ -1.57
CTSA-207ENST00000484855 KRTAP9-7A8MTY7 169 aa5.23□□□□□ -1.57
CTSA-207ENST00000484855 NEBP20929 6669 aa5.15□□□□□ -1.58
CTSA-207ENST00000484855 KRTAP5-5Q701N2 237 aaPredicted RBP5.08□□□□□ -1.6
CTSA-207ENST00000484855 LCE3BQ5TA77 95 aa5.05□□□□□ -1.6
CTSA-207ENST00000484855 MT1AP04731 61 aa5.02□□□□□ -1.61
CTSA-207ENST00000484855 KRTAP6-1Q3LI64 71 aa5□□□□□ -1.61
CTSA-207ENST00000484855 INE1O15225 51 aa4.89□□□□□ -1.63
CTSA-207ENST00000484855 SYNE1Q8NF91 8797 aaKnown RBP4.86□□□□□ -1.63
CTSA-207ENST00000484855 KRTAP5-4Q6L8H1 288 aa4.77□□□□□ -1.65
CTSA-207ENST00000484855 KRTAP9-4Q9BYQ2 154 aa4.76□□□□□ -1.65
CTSA-207ENST00000484855 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
CTSA-207ENST00000484855 KRTAP2-2Q9BYT5 123 aa4.68□□□□□ -1.66
CTSA-207ENST00000484855 KRTAP4-9Q9BYQ8 210 aa4.66□□□□□ -1.66
CTSA-207ENST00000484855 KRTAP20-1Q3LI63 56 aa4.65□□□□□ -1.66
CTSA-207ENST00000484855 LCE4AQ5TA78 99 aa4.65□□□□□ -1.67
CTSA-207ENST00000484855 MT4P47944 62 aa4.59□□□□□ -1.67
CTSA-207ENST00000484855 KRTAP6-2Q3LI66 62 aa4.58□□□□□ -1.68
CTSA-207ENST00000484855 KRTAP4-6Q9BYQ5 205 aa4.55□□□□□ -1.68
CTSA-207ENST00000484855 MT3P25713 68 aa4.54□□□□□ -1.68
CTSA-207ENST00000484855 LCE3DQ9BYE3 92 aa4.49□□□□□ -1.69
CTSA-207ENST00000484855 KRTAP20-2Q3LI61 65 aa4.47□□□□□ -1.69
CTSA-207ENST00000484855 LCE1DQ5T752 114 aa4.46□□□□□ -1.7
CTSA-207ENST00000484855 HMCN1Q96RW7 5635 aa4.45□□□□□ -1.7
CTSA-207ENST00000484855 KRTAP9-9Q9BYP9 154 aa4.43□□□□□ -1.7
CTSA-207ENST00000484855 LCE3EQ5T5B0 92 aa4.38□□□□□ -1.71
CTSA-207ENST00000484855 KRTAP5-2Q701N4 177 aa4.35□□□□□ -1.71
CTSA-207ENST00000484855 KRTAP5-3Q6L8H2 238 aa4.29□□□□□ -1.72
CTSA-207ENST00000484855 OBSCNQ5VST9 7968 aa4.21□□□□□ -1.74
CTSA-207ENST00000484855 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
CTSA-207ENST00000484855 PRM1P04553 51 aa3.91□□□□□ -1.78
CTSA-207ENST00000484855 AHNAK2Q8IVF2 5795 aa3.89□□□□□ -1.79
CTSA-207ENST00000484855 LCE1EQ5T753 118 aa3.89□□□□□ -1.79
CTSA-207ENST00000484855 KRTAP4-11Q9BYQ6 195 aa3.83□□□□□ -1.8
CTSA-207ENST00000484855 KRTAP4-12Q9BQ66 201 aa3.8□□□□□ -1.8
CTSA-207ENST00000484855 KRTAP5-1Q6L8H4 278 aa3.75□□□□□ -1.81
CTSA-207ENST00000484855 MUC5ACP98088 5654 aa3.75□□□□□ -1.81
CTSA-207ENST00000484855 LCE1BQ5T7P3 118 aa3.7□□□□□ -1.82
CTSA-207ENST00000484855 KRTAP5-8O75690 187 aa3.68□□□□□ -1.82
CTSA-207ENST00000484855 KRTAP5-10Q6L8G5 202 aa3.68□□□□□ -1.82
CTSA-207ENST00000484855 KRTAP4-2Q9BYR5 136 aa3.65□□□□□ -1.83
CTSA-207ENST00000484855 LCE1CQ5T751 118 aa3.63□□□□□ -1.83
CTSA-207ENST00000484855 KRTAP5-7Q6L8G8 165 aa3.58□□□□□ -1.84
CTSA-207ENST00000484855 GPR98Q8WXG9 6306 aa3.41□□□□□ -1.86
CTSA-207ENST00000484855 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.41□□□□□ -1.86
CTSA-207ENST00000484855 KRTAP21-2Q3LI59 83 aa3.25□□□□□ -1.89
CTSA-207ENST00000484855 KRTAP5-11Q6L8G4 156 aa3.19□□□□□ -1.9
CTSA-207ENST00000484855 MUC5BQ9HC84 5762 aaPredicted RBP3.19□□□□□ -1.9
CTSA-207ENST00000484855 KRTAP4-4Q9BYR3 166 aa2.93□□□□□ -1.94
CTSA-207ENST00000484855 AHNAKQ09666 5890 aaKnown RBP2.86□□□□□ -1.95
CTSA-207ENST00000484855 PHGR1C9JFL3 82 aa2.74□□□□□ -1.97
CTSA-207ENST00000484855 MUC19Q7Z5P9 8384 aa2.51□□□□□ -2.01
CTSA-207ENST00000484855 KRTAP21-1Q3LI58 79 aa2.39□□□□□ -2.03
CTSA-207ENST00000484855 MUC16Q8WXI7 14507 aa1.81□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 15.6 ms