RNA–Protein interactions for RNA: ENST00000481194.1

CCM2-214, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 5,304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-214ENST00000481194 KRTAP9-6A0A140TA67 174 aa6.54□□□□□ -1.36
CCM2-214ENST00000481194 MUC2Q02817 5179 aa6.39□□□□□ -1.39
CCM2-214ENST00000481194 MT1MQ8N339 61 aa6.37□□□□□ -1.39
CCM2-214ENST00000481194 KRTAP19-7Q3SYF9 63 aa6.35□□□□□ -1.39
CCM2-214ENST00000481194 KRTAP12-4P60329 112 aa6.3□□□□□ -1.4
CCM2-214ENST00000481194 KRTAP6-3Q3LI67 103 aa6.24□□□□□ -1.41
CCM2-214ENST00000481194 KRTAP4-7Q9BYR0 210 aa6.21□□□□□ -1.42
CCM2-214ENST00000481194 LCE3BQ5TA77 95 aa6.15□□□□□ -1.42
CCM2-214ENST00000481194 LCE1AQ5T7P2 110 aa6.15□□□□□ -1.43
CCM2-214ENST00000481194 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.09□□□□□ -1.43
CCM2-214ENST00000481194 KRTAP9-7A8MTY7 169 aa6.05□□□□□ -1.44
CCM2-214ENST00000481194 USH2AO75445 5202 aa6.02□□□□□ -1.45
CCM2-214ENST00000481194 FSIP2Q5CZC0 6907 aa5.96□□□□□ -1.46
CCM2-214ENST00000481194 KRTAP4-3Q9BYR4 195 aa5.96□□□□□ -1.46
CCM2-214ENST00000481194 LCE5AQ5TCM9 118 aa5.95□□□□□ -1.46
CCM2-214ENST00000481194 LOC100996750A0A140TA64 210 aa5.87□□□□□ -1.47
CCM2-214ENST00000481194 MT1AP04731 61 aa5.86□□□□□ -1.47
CCM2-214ENST00000481194 KRTAP20-1Q3LI63 56 aa5.83□□□□□ -1.48
CCM2-214ENST00000481194 LCE3DQ9BYE3 92 aa5.83□□□□□ -1.48
CCM2-214ENST00000481194 MT3P25713 68 aa5.81□□□□□ -1.48
CCM2-214ENST00000481194 KRTAP2-3P0C7H8 128 aa5.79□□□□□ -1.48
CCM2-214ENST00000481194 KRTAP2-4Q9BYR9 128 aa5.79□□□□□ -1.48
CCM2-214ENST00000481194 LCE3EQ5T5B0 92 aa5.76□□□□□ -1.49
CCM2-214ENST00000481194 KRTAP5-9P26371 169 aa5.75□□□□□ -1.49
CCM2-214ENST00000481194 MT4P47944 62 aa5.72□□□□□ -1.49
CCM2-214ENST00000481194 KRTAP2-1Q9BYU5 128 aa5.66□□□□□ -1.5
CCM2-214ENST00000481194 LCE4AQ5TA78 99 aa5.64□□□□□ -1.51
CCM2-214ENST00000481194 KRTAP2-2Q9BYT5 123 aa5.61□□□□□ -1.51
CCM2-214ENST00000481194 SSPOA2VEC9 5147 aa5.6□□□□□ -1.51
CCM2-214ENST00000481194 KRTAP9-6A8MVA2 160 aa5.56□□□□□ -1.52
CCM2-214ENST00000481194 SYNE2Q8WXH0 6885 aaKnown RBP5.54□□□□□ -1.52
CCM2-214ENST00000481194 FCGBPQ9Y6R7 5405 aaPredicted RBP5.53□□□□□ -1.52
CCM2-214ENST00000481194 KRTAP6-1Q3LI64 71 aa5.46□□□□□ -1.54
CCM2-214ENST00000481194 KRTAP9-4Q9BYQ2 154 aa5.46□□□□□ -1.54
CCM2-214ENST00000481194 MACF1Q9UPN3 7388 aaKnown RBP5.4□□□□□ -1.55
CCM2-214ENST00000481194 NEBP20929 6669 aa5.31□□□□□ -1.56
CCM2-214ENST00000481194 KRTAP6-2Q3LI66 62 aa5.26□□□□□ -1.57
CCM2-214ENST00000481194 PRM1P04553 51 aa5.21□□□□□ -1.57
CCM2-214ENST00000481194 KMT2DO14686 5537 aa5.21□□□□□ -1.58
CCM2-214ENST00000481194 KRTAP4-9Q9BYQ8 210 aa5.18□□□□□ -1.58
CCM2-214ENST00000481194 LCE1DQ5T752 114 aa5.14□□□□□ -1.59
CCM2-214ENST00000481194 LCE1BQ5T7P3 118 aa5.04□□□□□ -1.6
CCM2-214ENST00000481194 SYNE1Q8NF91 8797 aaKnown RBP4.96□□□□□ -1.61
CCM2-214ENST00000481194 MUC12Q9UKN1 5478 aa4.93□□□□□ -1.62
CCM2-214ENST00000481194 KRTAP20-2Q3LI61 65 aa4.87□□□□□ -1.63
CCM2-214ENST00000481194 KRTAP5-5Q701N2 237 aaPredicted RBP4.83□□□□□ -1.64
CCM2-214ENST00000481194 MDN1Q9NU22 5596 aa4.8□□□□□ -1.64
CCM2-214ENST00000481194 KRTAP4-6Q9BYQ5 205 aa4.8□□□□□ -1.64
CCM2-214ENST00000481194 KRTAP5-4Q6L8H1 288 aa4.79□□□□□ -1.64
CCM2-214ENST00000481194 OBSCNQ5VST9 7968 aa4.71□□□□□ -1.66
CCM2-214ENST00000481194 DSTQ03001 7570 aaKnown RBP4.64□□□□□ -1.67
CCM2-214ENST00000481194 KRTAP9-9Q9BYP9 154 aa4.48□□□□□ -1.69
CCM2-214ENST00000481194 LCE1EQ5T753 118 aa4.35□□□□□ -1.71
CCM2-214ENST00000481194 KRTAP4-11Q9BYQ6 195 aa4.3□□□□□ -1.72
CCM2-214ENST00000481194 LCE1CQ5T751 118 aa4.23□□□□□ -1.73
CCM2-214ENST00000481194 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
CCM2-214ENST00000481194 KRTAP5-2Q701N4 177 aa4.15□□□□□ -1.75
CCM2-214ENST00000481194 KRTAP5-3Q6L8H2 238 aa4.14□□□□□ -1.75
CCM2-214ENST00000481194 GPR98Q8WXG9 6306 aa3.98□□□□□ -1.77
CCM2-214ENST00000481194 HMCN1Q96RW7 5635 aa3.86□□□□□ -1.79
CCM2-214ENST00000481194 KRTAP5-8O75690 187 aa3.71□□□□□ -1.82
CCM2-214ENST00000481194 KRTAP4-12Q9BQ66 201 aa3.64□□□□□ -1.83
CCM2-214ENST00000481194 KRTAP4-2Q9BYR5 136 aa3.64□□□□□ -1.83
CCM2-214ENST00000481194 AHNAK2Q8IVF2 5795 aa3.64□□□□□ -1.83
CCM2-214ENST00000481194 MUC5ACP98088 5654 aa3.61□□□□□ -1.83
CCM2-214ENST00000481194 MUC19Q7Z5P9 8384 aa3.57□□□□□ -1.84
CCM2-214ENST00000481194 KRTAP5-1Q6L8H4 278 aa3.54□□□□□ -1.84
CCM2-214ENST00000481194 KRTAP4-4Q9BYR3 166 aa3.52□□□□□ -1.85
CCM2-214ENST00000481194 KRTAP5-10Q6L8G5 202 aa3.44□□□□□ -1.86
CCM2-214ENST00000481194 KRTAP5-11Q6L8G4 156 aa3.39□□□□□ -1.87
CCM2-214ENST00000481194 KRTAP5-7Q6L8G8 165 aa3.33□□□□□ -1.88
CCM2-214ENST00000481194 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.31□□□□□ -1.88
CCM2-214ENST00000481194 MUC5BQ9HC84 5762 aaPredicted RBP3.22□□□□□ -1.89
CCM2-214ENST00000481194 AHNAKQ09666 5890 aaKnown RBP3.19□□□□□ -1.9
CCM2-214ENST00000481194 KRTAP21-2Q3LI59 83 aa3.16□□□□□ -1.9
CCM2-214ENST00000481194 PHGR1C9JFL3 82 aa2.85□□□□□ -1.95
CCM2-214ENST00000481194 KRTAP21-1Q3LI58 79 aa2.49□□□□□ -2.01
CCM2-214ENST00000481194 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 184.3 ms