RNA–Protein interactions for RNA: ENST00000480956.1

LSM5-210, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM5, Length 1,736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-210ENST00000480956 MT1HL1P0DM35 61 aa2.67□□□□□ -1.98
LSM5-210ENST00000480956 DMBT1Q9UGM3 2413 aaPredicted RBP2.67□□□□□ -1.98
LSM5-210ENST00000480956 LPAP08519 4548 aa2.66□□□□□ -1.98
LSM5-210ENST00000480956 C9orf92A6NGG3 77 aa2.64□□□□□ -1.99
LSM5-210ENST00000480956 LCE1CQ5T751 118 aa2.64□□□□□ -1.99
LSM5-210ENST00000480956 LCE1BQ5T7P3 118 aa2.64□□□□□ -1.99
LSM5-210ENST00000480956 SPINK1P00995 79 aa2.62□□□□□ -1.99
LSM5-210ENST00000480956 LRP2P98164 4655 aa2.61□□□□□ -1.99
LSM5-210ENST00000480956 HMCN2Q8NDA2 5059 aa2.59□□□□□ -1.99
LSM5-210ENST00000480956 RPS29P62273 56 aaKnown RBP2.56□□□□□ -2
LSM5-210ENST00000480956 UBR4Q5T4S7 5183 aa2.53□□□□□ -2
LSM5-210ENST00000480956 MUC2Q02817 5179 aa2.51□□□□□ -2.01
LSM5-210ENST00000480956 RNF213Q63HN8 5207 aa2.49□□□□□ -2.01
LSM5-210ENST00000480956 MUC17Q685J3 4493 aa2.46□□□□□ -2.02
LSM5-210ENST00000480956 KRTAP4-1Q9BYQ7 146 aa2.44□□□□□ -2.02
LSM5-210ENST00000480956 FAT4Q6V0I7 4981 aa2.43□□□□□ -2.02
LSM5-210ENST00000480956 FLGP20930 4061 aaPredicted RBP2.31□□□□□ -2.04
LSM5-210ENST00000480956 KRTAP19-2Q3LHN2 52 aa2.31□□□□□ -2.04
LSM5-210ENST00000480956 S4R3F8 94 aa2.29□□□□□ -2.04
LSM5-210ENST00000480956 M0R2T5 61 aa2.28□□□□□ -2.04
LSM5-210ENST00000480956 MT1HP80294 61 aa2.27□□□□□ -2.05
LSM5-210ENST00000480956 KRTAP5-7Q6L8G8 165 aa2.26□□□□□ -2.05
LSM5-210ENST00000480956 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
LSM5-210ENST00000480956 M0QZ58 72 aa2.17□□□□□ -2.06
LSM5-210ENST00000480956 MT2AP02795 61 aa2.17□□□□□ -2.06
LSM5-210ENST00000480956 MT1FP04733 61 aa2.17□□□□□ -2.06
LSM5-210ENST00000480956 USH2AO75445 5202 aa2.13□□□□□ -2.07
LSM5-210ENST00000480956 FSIP2Q5CZC0 6907 aa2.11□□□□□ -2.07
LSM5-210ENST00000480956 SSPOA2VEC9 5147 aa2.05□□□□□ -2.08
LSM5-210ENST00000480956 SPRR2GQ9BYE4 73 aa2.03□□□□□ -2.08
LSM5-210ENST00000480956 MT1BP07438 61 aa2.01□□□□□ -2.09
LSM5-210ENST00000480956 KRTAP19-3Q7Z4W3 81 aa1.99□□□□□ -2.09
LSM5-210ENST00000480956 KRTAP19-8Q3LI54 63 aa1.98□□□□□ -2.09
LSM5-210ENST00000480956 KRTAP2-3P0C7H8 128 aa1.95□□□□□ -2.1
LSM5-210ENST00000480956 KRTAP2-4Q9BYR9 128 aa1.95□□□□□ -2.1
LSM5-210ENST00000480956 KRTAP2-1Q9BYU5 128 aa1.95□□□□□ -2.1
LSM5-210ENST00000480956 KMT2DO14686 5537 aa1.95□□□□□ -2.1
LSM5-210ENST00000480956 MT1XP80297 61 aa1.94□□□□□ -2.1
LSM5-210ENST00000480956 FCGBPQ9Y6R7 5405 aaPredicted RBP1.93□□□□□ -2.1
LSM5-210ENST00000480956 KRTAP21-2Q3LI59 83 aa1.92□□□□□ -2.1
LSM5-210ENST00000480956 CRCT1Q9UGL9 99 aa1.92□□□□□ -2.1
LSM5-210ENST00000480956 MUC5BQ9HC84 5762 aaPredicted RBP1.92□□□□□ -2.1
LSM5-210ENST00000480956 TNP1P09430 55 aa1.91□□□□□ -2.1
LSM5-210ENST00000480956 KRTAP19-6Q3LI70 58 aa1.89□□□□□ -2.11
LSM5-210ENST00000480956 MACF1Q9UPN3 7388 aaKnown RBP1.89□□□□□ -2.11
LSM5-210ENST00000480956 SYNE2Q8WXH0 6885 aaKnown RBP1.86□□□□□ -2.11
LSM5-210ENST00000480956 KRTAP8-1Q8IUC2 63 aa1.82□□□□□ -2.12
LSM5-210ENST00000480956 MUC12Q9UKN1 5478 aa1.8□□□□□ -2.12
LSM5-210ENST00000480956 KRTAP19-5Q3LI72 72 aa1.76□□□□□ -2.13
LSM5-210ENST00000480956 SPRR2FQ96RM1 72 aa1.75□□□□□ -2.13
LSM5-210ENST00000480956 GPR98Q8WXG9 6306 aa1.74□□□□□ -2.13
LSM5-210ENST00000480956 MDN1Q9NU22 5596 aa1.74□□□□□ -2.13
LSM5-210ENST00000480956 PRM1P04553 51 aa1.73□□□□□ -2.13
LSM5-210ENST00000480956 KRTAP19-7Q3SYF9 63 aa1.72□□□□□ -2.13
LSM5-210ENST00000480956 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
LSM5-210ENST00000480956 MT1EP04732 61 aa1.69□□□□□ -2.14
LSM5-210ENST00000480956 SPRR2EP22531 72 aa1.67□□□□□ -2.14
LSM5-210ENST00000480956 SPRR2BP35325 72 aa1.67□□□□□ -2.14
LSM5-210ENST00000480956 SPRR2AP35326 72 aa1.67□□□□□ -2.14
LSM5-210ENST00000480956 DSTQ03001 7570 aaKnown RBP1.66□□□□□ -2.14
LSM5-210ENST00000480956 MT1LQ93083 61 aa1.65□□□□□ -2.15
LSM5-210ENST00000480956 NEBP20929 6669 aa1.63□□□□□ -2.15
LSM5-210ENST00000480956 SPRR2DP22532 72 aa1.6□□□□□ -2.15
LSM5-210ENST00000480956 MT1MQ8N339 61 aa1.6□□□□□ -2.15
LSM5-210ENST00000480956 KRTAP20-1Q3LI63 56 aa1.59□□□□□ -2.16
LSM5-210ENST00000480956 MT1GP13640 62 aa1.58□□□□□ -2.16
LSM5-210ENST00000480956 MT4P47944 62 aa1.44□□□□□ -2.18
LSM5-210ENST00000480956 KRTAP21-1Q3LI58 79 aa1.44□□□□□ -2.18
LSM5-210ENST00000480956 AHNAK2Q8IVF2 5795 aa1.44□□□□□ -2.18
LSM5-210ENST00000480956 SYNE1Q8NF91 8797 aaKnown RBP1.43□□□□□ -2.18
LSM5-210ENST00000480956 KRTAP6-1Q3LI64 71 aa1.42□□□□□ -2.18
LSM5-210ENST00000480956 MT1AP04731 61 aa1.38□□□□□ -2.19
LSM5-210ENST00000480956 KRTAP20-2Q3LI61 65 aa1.32□□□□□ -2.2
LSM5-210ENST00000480956 KRTAP6-2Q3LI66 62 aa1.32□□□□□ -2.2
LSM5-210ENST00000480956 KRTAP5-10Q6L8G5 202 aa1.23□□□□□ -2.21
LSM5-210ENST00000480956 MUC5ACP98088 5654 aa1.22□□□□□ -2.21
LSM5-210ENST00000480956 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
LSM5-210ENST00000480956 PHGR1C9JFL3 82 aa0.83□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 175.5 ms