RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 AHNAK2Q8IVF2 5795 aa4.61□□□□□ -1.67
VCL-205ENST00000478896 LCE3AQ5TA76 89 aa4.59□□□□□ -1.67
VCL-205ENST00000478896 KRTAP5-10Q6L8G5 202 aa4.59□□□□□ -1.67
VCL-205ENST00000478896 SMIM26A0A096LP01 95 aa4.58□□□□□ -1.68
VCL-205ENST00000478896 TNP1P09430 55 aa4.57□□□□□ -1.68
VCL-205ENST00000478896 PCP4P48539 62 aa4.54□□□□□ -1.68
VCL-205ENST00000478896 A0A1B0GU69 56 aa4.53□□□□□ -1.68
VCL-205ENST00000478896 A8MU10 97 aa4.53□□□□□ -1.68
VCL-205ENST00000478896 COX7CP15954 63 aa4.5□□□□□ -1.69
VCL-205ENST00000478896 KRTAP9-9Q9BYP9 154 aa4.47□□□□□ -1.69
VCL-205ENST00000478896 KRTAP9-4Q9BYQ2 154 aa4.47□□□□□ -1.69
VCL-205ENST00000478896 H7BZZ5 65 aa4.45□□□□□ -1.7
VCL-205ENST00000478896 KRTAP5-3Q6L8H2 238 aa4.45□□□□□ -1.7
VCL-205ENST00000478896 KRTAP4-7Q9BYR0 210 aa4.45□□□□□ -1.7
VCL-205ENST00000478896 KRTAP5-7Q6L8G8 165 aa4.44□□□□□ -1.7
VCL-205ENST00000478896 KRTAP12-3P60328 96 aa4.42□□□□□ -1.7
VCL-205ENST00000478896 ANAPC13Q9BS18 74 aa4.42□□□□□ -1.7
VCL-205ENST00000478896 KRTAP20-2Q3LI61 65 aa4.4□□□□□ -1.71
VCL-205ENST00000478896 KRTAP15-1Q3LI76 137 aa4.35□□□□□ -1.71
VCL-205ENST00000478896 SPRR5A0A1B0GTR4 108 aa4.33□□□□□ -1.72
VCL-205ENST00000478896 KRTAP5-5Q701N2 237 aaPredicted RBP4.33□□□□□ -1.72
VCL-205ENST00000478896 PRR15LQ9BU68 103 aa4.33□□□□□ -1.72
VCL-205ENST00000478896 A0A0A0MQY5 61 aa4.32□□□□□ -1.72
VCL-205ENST00000478896 KRTAP12-4P60329 112 aa4.32□□□□□ -1.72
VCL-205ENST00000478896 CCDC179H3BU77 68 aa4.31□□□□□ -1.72
VCL-205ENST00000478896 ATP5EP56381 51 aaPredicted RBP4.24□□□□□ -1.73
VCL-205ENST00000478896 SYNE1Q8NF91 8797 aaKnown RBP4.22□□□□□ -1.73
VCL-205ENST00000478896 LINC01558Q9Y6Z2 57 aa4.19□□□□□ -1.74
VCL-205ENST00000478896 TMEM258P61165 79 aa4.18□□□□□ -1.74
VCL-205ENST00000478896 KRTAP25-1Q3LHN0 102 aa4.17□□□□□ -1.74
VCL-205ENST00000478896 UQCR11O14957 56 aa4.16□□□□□ -1.74
VCL-205ENST00000478896 K7ERS5 55 aa4.06□□□□□ -1.76
VCL-205ENST00000478896 KRTAP4-11Q9BYQ6 195 aa4.06□□□□□ -1.76
VCL-205ENST00000478896 MIR22HGQ0VDD5 57 aa4.05□□□□□ -1.76
VCL-205ENST00000478896 LCE3CQ5T5A8 94 aa4.03□□□□□ -1.76
VCL-205ENST00000478896 KRTAP5-2Q701N4 177 aa4□□□□□ -1.77
VCL-205ENST00000478896 MT1AP04731 61 aa3.99□□□□□ -1.77
VCL-205ENST00000478896 KRTAP6-1Q3LI64 71 aa3.98□□□□□ -1.77
VCL-205ENST00000478896 KRTAP4-2Q9BYR5 136 aa3.95□□□□□ -1.78
VCL-205ENST00000478896 V9GYY9 64 aa3.93□□□□□ -1.78
VCL-205ENST00000478896 KRTAP5-8O75690 187 aa3.92□□□□□ -1.78
VCL-205ENST00000478896 Q1T7F1 81 aa3.9□□□□□ -1.79
VCL-205ENST00000478896 PSPHP1O15172 72 aa3.87□□□□□ -1.79
VCL-205ENST00000478896 KRTAP6-2Q3LI66 62 aa3.85□□□□□ -1.79
VCL-205ENST00000478896 RPS28P62857 69 aaKnown RBP3.83□□□□□ -1.8
VCL-205ENST00000478896 OBSCNQ5VST9 7968 aa3.82□□□□□ -1.8
VCL-205ENST00000478896 MUC5ACP98088 5654 aa3.81□□□□□ -1.8
VCL-205ENST00000478896 MUC5BQ9HC84 5762 aaPredicted RBP3.8□□□□□ -1.8
VCL-205ENST00000478896 AHNAKQ09666 5890 aaKnown RBP3.8□□□□□ -1.8
VCL-205ENST00000478896 CDC42SE1Q9NRR8 79 aa3.79□□□□□ -1.8
VCL-205ENST00000478896 KRTAP9-6A8MVA2 160 aa3.78□□□□□ -1.8
VCL-205ENST00000478896 A6NED7 52 aa3.75□□□□□ -1.81
VCL-205ENST00000478896 ROMO1P60602 79 aa3.69□□□□□ -1.82
VCL-205ENST00000478896 MT3P25713 68 aa3.67□□□□□ -1.82
VCL-205ENST00000478896 KRTAP5-1Q6L8H4 278 aa3.63□□□□□ -1.83
VCL-205ENST00000478896 PRAC1Q96KF2 57 aa3.57□□□□□ -1.84
VCL-205ENST00000478896 LCE1EQ5T753 118 aa3.39□□□□□ -1.87
VCL-205ENST00000478896 BRK1Q8WUW1 75 aa3.39□□□□□ -1.87
VCL-205ENST00000478896 NDUFAF8A1L188 74 aa3.37□□□□□ -1.87
VCL-205ENST00000478896 LCE1BQ5T7P3 118 aa3.27□□□□□ -1.89
VCL-205ENST00000478896 PMAIP1Q13794 54 aa3.19□□□□□ -1.9
VCL-205ENST00000478896 LCE1CQ5T751 118 aa3.15□□□□□ -1.91
VCL-205ENST00000478896 LCE1FQ5T754 118 aa3.11□□□□□ -1.91
VCL-205ENST00000478896 PRO0628Q9UI54 55 aa3.08□□□□□ -1.92
VCL-205ENST00000478896 KTN1-AS1Q86SY8 53 aa2.92□□□□□ -1.94
VCL-205ENST00000478896 KRTAP5-11Q6L8G4 156 aa2.88□□□□□ -1.95
VCL-205ENST00000478896 LCE3DQ9BYE3 92 aa2.87□□□□□ -1.95
VCL-205ENST00000478896 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.83□□□□□ -1.96
VCL-205ENST00000478896 PHGR1C9JFL3 82 aa2.72□□□□□ -1.97
VCL-205ENST00000478896 LCE3EQ5T5B0 92 aa2.66□□□□□ -1.98
VCL-205ENST00000478896 KRTAP21-2Q3LI59 83 aa2.6□□□□□ -1.99
VCL-205ENST00000478896 LUZP6Q538Z0 58 aa2.56□□□□□ -2
VCL-205ENST00000478896 KRTAP4-4Q9BYR3 166 aa2.45□□□□□ -2.02
VCL-205ENST00000478896 MUC19Q7Z5P9 8384 aa2.36□□□□□ -2.03
VCL-205ENST00000478896 KRTAP21-1Q3LI58 79 aa2.06□□□□□ -2.08
VCL-205ENST00000478896 PRM1P04553 51 aa1.88□□□□□ -2.11
VCL-205ENST00000478896 INE1O15225 51 aa1.79□□□□□ -2.12
VCL-205ENST00000478896 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 5.8 ms