RNA–Protein interactions for RNA: ENST00000475298.5

CCNL1-216, Transcript of cyclin L1, humanhuman

TSL 1 (best)

Gene CCNL1, Length 2,362 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNL1-216ENST00000475298 KRTAP2-3P0C7H8 128 aa4.63□□□□□ -1.67
CCNL1-216ENST00000475298 KRTAP2-4Q9BYR9 128 aa4.63□□□□□ -1.67
CCNL1-216ENST00000475298 KRTAP2-1Q9BYU5 128 aa4.63□□□□□ -1.67
CCNL1-216ENST00000475298 FSIP2Q5CZC0 6907 aa4.63□□□□□ -1.67
CCNL1-216ENST00000475298 KRTAP19-7Q3SYF9 63 aa4.6□□□□□ -1.67
CCNL1-216ENST00000475298 LCE3BQ5TA77 95 aa4.59□□□□□ -1.67
CCNL1-216ENST00000475298 KRTAP19-6Q3LI70 58 aa4.58□□□□□ -1.68
CCNL1-216ENST00000475298 KRTAP4-7Q9BYR0 210 aa4.55□□□□□ -1.68
CCNL1-216ENST00000475298 KRTAP20-1Q3LI63 56 aa4.55□□□□□ -1.68
CCNL1-216ENST00000475298 KRTAP4-12Q9BQ66 201 aa4.55□□□□□ -1.68
CCNL1-216ENST00000475298 FCGBPQ9Y6R7 5405 aaPredicted RBP4.5□□□□□ -1.69
CCNL1-216ENST00000475298 KRTAP9-9Q9BYP9 154 aa4.48□□□□□ -1.69
CCNL1-216ENST00000475298 KRTAP9-4Q9BYQ2 154 aa4.48□□□□□ -1.69
CCNL1-216ENST00000475298 MT1EP04732 61 aa4.47□□□□□ -1.69
CCNL1-216ENST00000475298 MT1LQ93083 61 aa4.45□□□□□ -1.7
CCNL1-216ENST00000475298 NEBP20929 6669 aa4.4□□□□□ -1.71
CCNL1-216ENST00000475298 MUC12Q9UKN1 5478 aa4.33□□□□□ -1.72
CCNL1-216ENST00000475298 LCE1DQ5T752 114 aa4.32□□□□□ -1.72
CCNL1-216ENST00000475298 MACF1Q9UPN3 7388 aaKnown RBP4.29□□□□□ -1.72
CCNL1-216ENST00000475298 KRTAP4-3Q9BYR4 195 aa4.29□□□□□ -1.72
CCNL1-216ENST00000475298 KRTAP5-9P26371 169 aa4.28□□□□□ -1.72
CCNL1-216ENST00000475298 KRTAP19-4Q3LI73 84 aa4.27□□□□□ -1.73
CCNL1-216ENST00000475298 SYNE2Q8WXH0 6885 aaKnown RBP4.22□□□□□ -1.73
CCNL1-216ENST00000475298 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.73
CCNL1-216ENST00000475298 KRTAP12-4P60329 112 aa4.2□□□□□ -1.74
CCNL1-216ENST00000475298 MT1GP13640 62 aa4.19□□□□□ -1.74
CCNL1-216ENST00000475298 KRTAP19-3Q7Z4W3 81 aa4.18□□□□□ -1.74
CCNL1-216ENST00000475298 MT1MQ8N339 61 aa4.18□□□□□ -1.74
CCNL1-216ENST00000475298 KRTAP2-2Q9BYT5 123 aa4.17□□□□□ -1.74
CCNL1-216ENST00000475298 KRTAP4-2Q9BYR5 136 aa4.15□□□□□ -1.75
CCNL1-216ENST00000475298 DSTQ03001 7570 aaKnown RBP4.13□□□□□ -1.75
CCNL1-216ENST00000475298 SPRR2FQ96RM1 72 aa4.11□□□□□ -1.75
CCNL1-216ENST00000475298 LCE5AQ5TCM9 118 aa4.05□□□□□ -1.76
CCNL1-216ENST00000475298 KRTAP4-11Q9BYQ6 195 aa4.02□□□□□ -1.77
CCNL1-216ENST00000475298 SPRR2EP22531 72 aa3.97□□□□□ -1.77
CCNL1-216ENST00000475298 SPRR2BP35325 72 aa3.97□□□□□ -1.77
CCNL1-216ENST00000475298 SPRR2AP35326 72 aa3.97□□□□□ -1.77
CCNL1-216ENST00000475298 MDN1Q9NU22 5596 aa3.96□□□□□ -1.78
CCNL1-216ENST00000475298 LCE1AQ5T7P2 110 aa3.94□□□□□ -1.78
CCNL1-216ENST00000475298 GPR98Q8WXG9 6306 aa3.9□□□□□ -1.79
CCNL1-216ENST00000475298 SPRR2DP22532 72 aa3.88□□□□□ -1.79
CCNL1-216ENST00000475298 KRTAP5-3Q6L8H2 238 aa3.85□□□□□ -1.79
CCNL1-216ENST00000475298 SYNE1Q8NF91 8797 aaKnown RBP3.83□□□□□ -1.8
CCNL1-216ENST00000475298 LCE4AQ5TA78 99 aa3.82□□□□□ -1.8
CCNL1-216ENST00000475298 KRTAP6-1Q3LI64 71 aa3.8□□□□□ -1.8
CCNL1-216ENST00000475298 PRM1P04553 51 aa3.8□□□□□ -1.8
CCNL1-216ENST00000475298 KRTAP5-5Q701N2 237 aaPredicted RBP3.79□□□□□ -1.8
CCNL1-216ENST00000475298 MT1AP04731 61 aa3.74□□□□□ -1.81
CCNL1-216ENST00000475298 LCE3EQ5T5B0 92 aa3.68□□□□□ -1.82
CCNL1-216ENST00000475298 LCE3DQ9BYE3 92 aa3.68□□□□□ -1.82
CCNL1-216ENST00000475298 KRTAP5-7Q6L8G8 165 aa3.59□□□□□ -1.83
CCNL1-216ENST00000475298 KRTAP5-10Q6L8G5 202 aa3.55□□□□□ -1.84
CCNL1-216ENST00000475298 KRTAP6-2Q3LI66 62 aa3.52□□□□□ -1.85
CCNL1-216ENST00000475298 OBSCNQ5VST9 7968 aa3.48□□□□□ -1.85
CCNL1-216ENST00000475298 AHNAK2Q8IVF2 5795 aa3.43□□□□□ -1.86
CCNL1-216ENST00000475298 HMCN1Q96RW7 5635 aa3.36□□□□□ -1.87
CCNL1-216ENST00000475298 LCE1EQ5T753 118 aa3.36□□□□□ -1.87
CCNL1-216ENST00000475298 MT3P25713 68 aa3.33□□□□□ -1.88
CCNL1-216ENST00000475298 KRTAP5-4Q6L8H1 288 aa3.33□□□□□ -1.88
CCNL1-216ENST00000475298 MT4P47944 62 aa3.27□□□□□ -1.89
CCNL1-216ENST00000475298 AHNAKQ09666 5890 aaKnown RBP3.19□□□□□ -1.9
CCNL1-216ENST00000475298 MUC5BQ9HC84 5762 aaPredicted RBP3.11□□□□□ -1.91
CCNL1-216ENST00000475298 KRTAP20-2Q3LI61 65 aa3.1□□□□□ -1.91
CCNL1-216ENST00000475298 KRTAP5-2Q701N4 177 aa3.04□□□□□ -1.92
CCNL1-216ENST00000475298 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
CCNL1-216ENST00000475298 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.89□□□□□ -1.95
CCNL1-216ENST00000475298 KRTAP5-8O75690 187 aa2.85□□□□□ -1.95
CCNL1-216ENST00000475298 LCE1BQ5T7P3 118 aa2.76□□□□□ -1.97
CCNL1-216ENST00000475298 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
CCNL1-216ENST00000475298 KRTAP5-11Q6L8G4 156 aa2.67□□□□□ -1.98
CCNL1-216ENST00000475298 KRTAP5-1Q6L8H4 278 aa2.61□□□□□ -1.99
CCNL1-216ENST00000475298 LCE1CQ5T751 118 aa2.58□□□□□ -2
CCNL1-216ENST00000475298 KRTAP21-1Q3LI58 79 aa2.45□□□□□ -2.02
CCNL1-216ENST00000475298 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
CCNL1-216ENST00000475298 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
CCNL1-216ENST00000475298 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
CCNL1-216ENST00000475298 PHGR1C9JFL3 82 aa2.05□□□□□ -2.08
CCNL1-216ENST00000475298 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 7.9 ms