RNA–Protein interactions for RNA: ENST00000474289.6

ECHDC1-214, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ECHDC1, Length 2,443 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-214ENST00000474289 KRTAP12-4P60329 112 aa6□□□□□ -1.45
ECHDC1-214ENST00000474289 KRTAP4-3Q9BYR4 195 aa5.93□□□□□ -1.46
ECHDC1-214ENST00000474289 MT1GP13640 62 aa5.89□□□□□ -1.47
ECHDC1-214ENST00000474289 FSIP2Q5CZC0 6907 aa5.86□□□□□ -1.47
ECHDC1-214ENST00000474289 FCGBPQ9Y6R7 5405 aaPredicted RBP5.81□□□□□ -1.48
ECHDC1-214ENST00000474289 MUC12Q9UKN1 5478 aa5.79□□□□□ -1.48
ECHDC1-214ENST00000474289 CRCT1Q9UGL9 99 aa5.78□□□□□ -1.48
ECHDC1-214ENST00000474289 KRTAP19-6Q3LI70 58 aa5.74□□□□□ -1.49
ECHDC1-214ENST00000474289 MT1MQ8N339 61 aa5.72□□□□□ -1.49
ECHDC1-214ENST00000474289 KRTAP19-3Q7Z4W3 81 aa5.66□□□□□ -1.5
ECHDC1-214ENST00000474289 DSTQ03001 7570 aaKnown RBP5.59□□□□□ -1.51
ECHDC1-214ENST00000474289 KRTAP4-9Q9BYQ8 210 aa5.59□□□□□ -1.51
ECHDC1-214ENST00000474289 LCE3BQ5TA77 95 aa5.58□□□□□ -1.52
ECHDC1-214ENST00000474289 KRTAP9-2Q9BYQ4 174 aa5.52□□□□□ -1.53
ECHDC1-214ENST00000474289 SYNE1Q8NF91 8797 aaKnown RBP5.51□□□□□ -1.53
ECHDC1-214ENST00000474289 MT1AP04731 61 aa5.46□□□□□ -1.54
ECHDC1-214ENST00000474289 LCE5AQ5TCM9 118 aa5.44□□□□□ -1.54
ECHDC1-214ENST00000474289 KRTAP9-7A8MTY7 169 aa5.41□□□□□ -1.54
ECHDC1-214ENST00000474289 PRM1P04553 51 aa5.38□□□□□ -1.55
ECHDC1-214ENST00000474289 LCE3DQ9BYE3 92 aa5.38□□□□□ -1.55
ECHDC1-214ENST00000474289 KRTAP5-5Q701N2 237 aaPredicted RBP5.37□□□□□ -1.55
ECHDC1-214ENST00000474289 SPRR2FQ96RM1 72 aa5.37□□□□□ -1.55
ECHDC1-214ENST00000474289 LCE3EQ5T5B0 92 aa5.34□□□□□ -1.55
ECHDC1-214ENST00000474289 KRTAP6-1Q3LI64 71 aa5.32□□□□□ -1.56
ECHDC1-214ENST00000474289 MACF1Q9UPN3 7388 aaKnown RBP5.21□□□□□ -1.58
ECHDC1-214ENST00000474289 SYNE2Q8WXH0 6885 aaKnown RBP5.13□□□□□ -1.59
ECHDC1-214ENST00000474289 MDN1Q9NU22 5596 aa5.12□□□□□ -1.59
ECHDC1-214ENST00000474289 KRTAP9-6A0A140TA67 174 aa5.06□□□□□ -1.6
ECHDC1-214ENST00000474289 KRTAP6-2Q3LI66 62 aa5.06□□□□□ -1.6
ECHDC1-214ENST00000474289 KRTAP6-3Q3LI67 103 aa5.02□□□□□ -1.61
ECHDC1-214ENST00000474289 LCE1AQ5T7P2 110 aa4.94□□□□□ -1.62
ECHDC1-214ENST00000474289 KRTAP4-6Q9BYQ5 205 aa4.92□□□□□ -1.62
ECHDC1-214ENST00000474289 OBSCNQ5VST9 7968 aa4.85□□□□□ -1.63
ECHDC1-214ENST00000474289 KRTAP9-4Q9BYQ2 154 aa4.84□□□□□ -1.64
ECHDC1-214ENST00000474289 KRTAP2-2Q9BYT5 123 aa4.8□□□□□ -1.64
ECHDC1-214ENST00000474289 KRTAP5-9P26371 169 aa4.79□□□□□ -1.64
ECHDC1-214ENST00000474289 SPRR2EP22531 72 aa4.78□□□□□ -1.64
ECHDC1-214ENST00000474289 SPRR2BP35325 72 aa4.78□□□□□ -1.64
ECHDC1-214ENST00000474289 SPRR2AP35326 72 aa4.78□□□□□ -1.64
ECHDC1-214ENST00000474289 MT3P25713 68 aa4.62□□□□□ -1.67
ECHDC1-214ENST00000474289 SPRR2DP22532 72 aa4.55□□□□□ -1.68
ECHDC1-214ENST00000474289 LCE1EQ5T753 118 aa4.36□□□□□ -1.71
ECHDC1-214ENST00000474289 KRTAP5-4Q6L8H1 288 aa4.23□□□□□ -1.73
ECHDC1-214ENST00000474289 LCE1DQ5T752 114 aa4.22□□□□□ -1.73
ECHDC1-214ENST00000474289 KRTAP5-3Q6L8H2 238 aa4.21□□□□□ -1.74
ECHDC1-214ENST00000474289 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.17□□□□□ -1.74
ECHDC1-214ENST00000474289 MT4P47944 62 aa4.1□□□□□ -1.75
ECHDC1-214ENST00000474289 MUC5ACP98088 5654 aa4.08□□□□□ -1.76
ECHDC1-214ENST00000474289 KRTAP4-11Q9BYQ6 195 aa4.02□□□□□ -1.77
ECHDC1-214ENST00000474289 KRTAP5-2Q701N4 177 aa4.01□□□□□ -1.77
ECHDC1-214ENST00000474289 KRTAP20-2Q3LI61 65 aa4.01□□□□□ -1.77
ECHDC1-214ENST00000474289 KRTAP9-9Q9BYP9 154 aa3.94□□□□□ -1.78
ECHDC1-214ENST00000474289 NEBP20929 6669 aa3.92□□□□□ -1.78
ECHDC1-214ENST00000474289 KRTAP4-12Q9BQ66 201 aa3.91□□□□□ -1.78
ECHDC1-214ENST00000474289 HMCN1Q96RW7 5635 aa3.89□□□□□ -1.79
ECHDC1-214ENST00000474289 KRTAP5-10Q6L8G5 202 aa3.89□□□□□ -1.79
ECHDC1-214ENST00000474289 LCE4AQ5TA78 99 aa3.89□□□□□ -1.79
ECHDC1-214ENST00000474289 KRTAP4-2Q9BYR5 136 aa3.76□□□□□ -1.81
ECHDC1-214ENST00000474289 LCE1BQ5T7P3 118 aa3.75□□□□□ -1.81
ECHDC1-214ENST00000474289 KRTAP5-1Q6L8H4 278 aa3.74□□□□□ -1.81
ECHDC1-214ENST00000474289 KRTAP20-1Q3LI63 56 aa3.63□□□□□ -1.83
ECHDC1-214ENST00000474289 LCE1CQ5T751 118 aa3.46□□□□□ -1.85
ECHDC1-214ENST00000474289 KRTAP21-1Q3LI58 79 aa3.42□□□□□ -1.86
ECHDC1-214ENST00000474289 KRTAP21-2Q3LI59 83 aa3.4□□□□□ -1.86
ECHDC1-214ENST00000474289 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
ECHDC1-214ENST00000474289 MUC19Q7Z5P9 8384 aa3.29□□□□□ -1.88
ECHDC1-214ENST00000474289 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.29□□□□□ -1.88
ECHDC1-214ENST00000474289 KRTAP4-4Q9BYR3 166 aa3.18□□□□□ -1.9
ECHDC1-214ENST00000474289 KRTAP5-8O75690 187 aa3.09□□□□□ -1.92
ECHDC1-214ENST00000474289 KRTAP5-7Q6L8G8 165 aa3.02□□□□□ -1.93
ECHDC1-214ENST00000474289 AHNAK2Q8IVF2 5795 aa2.94□□□□□ -1.94
ECHDC1-214ENST00000474289 KRTAP5-11Q6L8G4 156 aa2.94□□□□□ -1.94
ECHDC1-214ENST00000474289 MUC5BQ9HC84 5762 aaPredicted RBP2.91□□□□□ -1.94
ECHDC1-214ENST00000474289 PHGR1C9JFL3 82 aa2.57□□□□□ -2
ECHDC1-214ENST00000474289 GPR98Q8WXG9 6306 aa2.33□□□□□ -2.04
ECHDC1-214ENST00000474289 AHNAKQ09666 5890 aaKnown RBP2.07□□□□□ -2.08
ECHDC1-214ENST00000474289 MUC16Q8WXI7 14507 aa1.81□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 83.9 ms