RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 KRTAP2-3P0C7H8 128 aa3.71□□□□□ -1.82
HDAC3-205ENST00000469550 KRTAP2-4Q9BYR9 128 aa3.71□□□□□ -1.82
HDAC3-205ENST00000469550 MT1XP80297 61 aa3.68□□□□□ -1.82
HDAC3-205ENST00000469550 KRTAP10-12P60413 245 aa3.67□□□□□ -1.82
HDAC3-205ENST00000469550 SPRR2FQ96RM1 72 aa3.63□□□□□ -1.83
HDAC3-205ENST00000469550 SPRR2EP22531 72 aa3.63□□□□□ -1.83
HDAC3-205ENST00000469550 SPRR2BP35325 72 aa3.63□□□□□ -1.83
HDAC3-205ENST00000469550 SPRR2AP35326 72 aa3.63□□□□□ -1.83
HDAC3-205ENST00000469550 LCE1AQ5T7P2 110 aa3.58□□□□□ -1.84
HDAC3-205ENST00000469550 KRTAP2-2Q9BYT5 123 aa3.58□□□□□ -1.84
HDAC3-205ENST00000469550 KRTAP2-1Q9BYU5 128 aa3.58□□□□□ -1.84
HDAC3-205ENST00000469550 KRTAP10-7P60409 375 aaPredicted RBP3.57□□□□□ -1.84
HDAC3-205ENST00000469550 LCE3CQ5T5A8 94 aa3.52□□□□□ -1.85
HDAC3-205ENST00000469550 SPRR2DP22532 72 aa3.51□□□□□ -1.85
HDAC3-205ENST00000469550 KRTAP4-8A0A0G2JLE6 195 aa3.48□□□□□ -1.85
HDAC3-205ENST00000469550 KRTAP4-8Q9BYQ9 185 aa3.48□□□□□ -1.85
HDAC3-205ENST00000469550 KRTAP19-5Q3LI72 72 aa3.47□□□□□ -1.85
HDAC3-205ENST00000469550 LCE3BQ5TA77 95 aa3.43□□□□□ -1.86
HDAC3-205ENST00000469550 KRTAP19-4Q3LI73 84 aa3.4□□□□□ -1.86
HDAC3-205ENST00000469550 GPR98Q8WXG9 6306 aa3.39□□□□□ -1.87
HDAC3-205ENST00000469550 KRTAP9-6A8MVA2 160 aa3.37□□□□□ -1.87
HDAC3-205ENST00000469550 KRTAP19-7Q3SYF9 63 aa3.29□□□□□ -1.88
HDAC3-205ENST00000469550 LCE5AQ5TCM9 118 aa3.27□□□□□ -1.89
HDAC3-205ENST00000469550 KRTAP19-3Q7Z4W3 81 aa3.23□□□□□ -1.89
HDAC3-205ENST00000469550 DSTQ03001 7570 aaKnown RBP3.23□□□□□ -1.89
HDAC3-205ENST00000469550 MT1EP04732 61 aa3.22□□□□□ -1.89
HDAC3-205ENST00000469550 MT1LQ93083 61 aa3.21□□□□□ -1.89
HDAC3-205ENST00000469550 KRTAP4-7Q9BYR0 210 aa3.21□□□□□ -1.9
HDAC3-205ENST00000469550 KRTAP4-9Q9BYQ8 210 aa3.2□□□□□ -1.9
HDAC3-205ENST00000469550 MT1GP13640 62 aa3.14□□□□□ -1.91
HDAC3-205ENST00000469550 LCE1DQ5T752 114 aa3.14□□□□□ -1.91
HDAC3-205ENST00000469550 LCE4AQ5TA78 99 aa3.13□□□□□ -1.91
HDAC3-205ENST00000469550 HMCN1Q96RW7 5635 aa3.11□□□□□ -1.91
HDAC3-205ENST00000469550 AHNAK2Q8IVF2 5795 aa3.09□□□□□ -1.91
HDAC3-205ENST00000469550 MT1MQ8N339 61 aa3.08□□□□□ -1.92
HDAC3-205ENST00000469550 MT4P47944 62 aa3.06□□□□□ -1.92
HDAC3-205ENST00000469550 KRTAP5-4Q6L8H1 288 aa3.06□□□□□ -1.92
HDAC3-205ENST00000469550 KRTAP5-10Q6L8G5 202 aa3.03□□□□□ -1.92
HDAC3-205ENST00000469550 KRTAP12-4P60329 112 aa3□□□□□ -1.93
HDAC3-205ENST00000469550 LOC100996750A0A140TA64 210 aa2.98□□□□□ -1.93
HDAC3-205ENST00000469550 KRTAP4-6Q9BYQ5 205 aa2.97□□□□□ -1.93
HDAC3-205ENST00000469550 KRTAP4-3Q9BYR4 195 aa2.97□□□□□ -1.93
HDAC3-205ENST00000469550 KRTAP5-7Q6L8G8 165 aa2.95□□□□□ -1.94
HDAC3-205ENST00000469550 KRTAP5-3Q6L8H2 238 aa2.91□□□□□ -1.94
HDAC3-205ENST00000469550 KRTAP20-2Q3LI61 65 aa2.87□□□□□ -1.95
HDAC3-205ENST00000469550 MT1AP04731 61 aa2.86□□□□□ -1.95
HDAC3-205ENST00000469550 KRTAP5-5Q701N2 237 aaPredicted RBP2.86□□□□□ -1.95
HDAC3-205ENST00000469550 SYNE1Q8NF91 8797 aaKnown RBP2.75□□□□□ -1.97
HDAC3-205ENST00000469550 LCE3DQ9BYE3 92 aa2.74□□□□□ -1.97
HDAC3-205ENST00000469550 LCE3EQ5T5B0 92 aa2.73□□□□□ -1.97
HDAC3-205ENST00000469550 KRTAP6-1Q3LI64 71 aa2.7□□□□□ -1.98
HDAC3-205ENST00000469550 PRM1P04553 51 aa2.66□□□□□ -1.98
HDAC3-205ENST00000469550 KRTAP5-2Q701N4 177 aa2.66□□□□□ -1.98
HDAC3-205ENST00000469550 KRTAP4-11Q9BYQ6 195 aa2.66□□□□□ -1.98
HDAC3-205ENST00000469550 AHNAKQ09666 5890 aaKnown RBP2.62□□□□□ -1.99
HDAC3-205ENST00000469550 KRTAP5-8O75690 187 aa2.58□□□□□ -2
HDAC3-205ENST00000469550 MUC5ACP98088 5654 aa2.57□□□□□ -2
HDAC3-205ENST00000469550 KRTAP6-2Q3LI66 62 aa2.54□□□□□ -2
HDAC3-205ENST00000469550 KRTAP9-4Q9BYQ2 154 aa2.53□□□□□ -2
HDAC3-205ENST00000469550 MUC5BQ9HC84 5762 aaPredicted RBP2.52□□□□□ -2.01
HDAC3-205ENST00000469550 KRTAP9-9Q9BYP9 154 aa2.46□□□□□ -2.02
HDAC3-205ENST00000469550 MT3P25713 68 aa2.43□□□□□ -2.02
HDAC3-205ENST00000469550 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.03
HDAC3-205ENST00000469550 OBSCNQ5VST9 7968 aa2.39□□□□□ -2.03
HDAC3-205ENST00000469550 LCE1EQ5T753 118 aa2.25□□□□□ -2.05
HDAC3-205ENST00000469550 KRTAP4-2Q9BYR5 136 aa2.13□□□□□ -2.07
HDAC3-205ENST00000469550 LCE1CQ5T751 118 aa2.08□□□□□ -2.08
HDAC3-205ENST00000469550 LCE1BQ5T7P3 118 aa2.08□□□□□ -2.08
HDAC3-205ENST00000469550 LCE1FQ5T754 118 aa2.07□□□□□ -2.08
HDAC3-205ENST00000469550 KRTAP4-12Q9BQ66 201 aa1.93□□□□□ -2.1
HDAC3-205ENST00000469550 KRTAP5-11Q6L8G4 156 aa1.91□□□□□ -2.1
HDAC3-205ENST00000469550 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.11
HDAC3-205ENST00000469550 KRTAP21-2Q3LI59 83 aa1.76□□□□□ -2.13
HDAC3-205ENST00000469550 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
HDAC3-205ENST00000469550 PHGR1C9JFL3 82 aa1.74□□□□□ -2.13
HDAC3-205ENST00000469550 KRTAP4-4Q9BYR3 166 aa1.54□□□□□ -2.16
HDAC3-205ENST00000469550 MUC19Q7Z5P9 8384 aa1.51□□□□□ -2.17
HDAC3-205ENST00000469550 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 102.8 ms