RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 LCE3DQ9BYE3 92 aa1.79□□□□□ -2.12
TMEM39A-204ENST00000468545 PLAC4Q8WY50 150 aa1.78□□□□□ -2.12
TMEM39A-204ENST00000468545 SPRR2GQ9BYE4 73 aa1.78□□□□□ -2.12
TMEM39A-204ENST00000468545 SPRR5A0A1B0GTR4 108 aa1.75□□□□□ -2.13
TMEM39A-204ENST00000468545 KRTAP19-8Q3LI54 63 aa1.75□□□□□ -2.13
TMEM39A-204ENST00000468545 SSPOA2VEC9 5147 aa1.74□□□□□ -2.13
TMEM39A-204ENST00000468545 MT1BP07438 61 aa1.74□□□□□ -2.13
TMEM39A-204ENST00000468545 BRK1Q8WUW1 75 aa1.74□□□□□ -2.13
TMEM39A-204ENST00000468545 PRO0628Q9UI54 55 aa1.74□□□□□ -2.13
TMEM39A-204ENST00000468545 K7ERS5 55 aa1.73□□□□□ -2.13
TMEM39A-204ENST00000468545 KRTAP12-1P59990 96 aa1.73□□□□□ -2.13
TMEM39A-204ENST00000468545 CDC42SE1Q9NRR8 79 aa1.73□□□□□ -2.13
TMEM39A-204ENST00000468545 FSIP2Q5CZC0 6907 aa1.73□□□□□ -2.13
TMEM39A-204ENST00000468545 A6NN06 94 aa1.71□□□□□ -2.14
TMEM39A-204ENST00000468545 LCE1CQ5T751 118 aa1.71□□□□□ -2.14
TMEM39A-204ENST00000468545 LCE1BQ5T7P3 118 aa1.71□□□□□ -2.14
TMEM39A-204ENST00000468545 PP632Q6XCG6 107 aa1.71□□□□□ -2.14
TMEM39A-204ENST00000468545 CRCT1Q9UGL9 99 aa1.69□□□□□ -2.14
TMEM39A-204ENST00000468545 MT1XP80297 61 aa1.67□□□□□ -2.14
TMEM39A-204ENST00000468545 KRTAP19-6Q3LI70 58 aa1.67□□□□□ -2.14
TMEM39A-204ENST00000468545 PRO2289Q9P1D8 64 aa1.67□□□□□ -2.14
TMEM39A-204ENST00000468545 C10orf95Q9H7T3 257 aa1.66□□□□□ -2.14
TMEM39A-204ENST00000468545 FCGBPQ9Y6R7 5405 aaPredicted RBP1.66□□□□□ -2.14
TMEM39A-204ENST00000468545 PMAIP1Q13794 54 aa1.64□□□□□ -2.15
TMEM39A-204ENST00000468545 ROMO1P60602 79 aa1.63□□□□□ -2.15
TMEM39A-204ENST00000468545 TNP1P09430 55 aa1.62□□□□□ -2.15
TMEM39A-204ENST00000468545 KMT2DO14686 5537 aa1.61□□□□□ -2.15
TMEM39A-204ENST00000468545 KTN1-AS1Q86SY8 53 aa1.6□□□□□ -2.15
TMEM39A-204ENST00000468545 KRTAP25-1Q3LHN0 102 aa1.59□□□□□ -2.15
TMEM39A-204ENST00000468545 SYNE2Q8WXH0 6885 aaKnown RBP1.59□□□□□ -2.16
TMEM39A-204ENST00000468545 MACF1Q9UPN3 7388 aaKnown RBP1.58□□□□□ -2.16
TMEM39A-204ENST00000468545 KRTAP8-1Q8IUC2 63 aa1.55□□□□□ -2.16
TMEM39A-204ENST00000468545 KRTAP5-8O75690 187 aa1.52□□□□□ -2.17
TMEM39A-204ENST00000468545 KRTAP19-5Q3LI72 72 aa1.52□□□□□ -2.17
TMEM39A-204ENST00000468545 SPRR2FQ96RM1 72 aa1.51□□□□□ -2.17
TMEM39A-204ENST00000468545 KRTAP6-3Q3LI67 103 aa1.5□□□□□ -2.17
TMEM39A-204ENST00000468545 MUC12Q9UKN1 5478 aa1.5□□□□□ -2.17
TMEM39A-204ENST00000468545 KRTAP12-3P60328 96 aa1.49□□□□□ -2.17
TMEM39A-204ENST00000468545 KRTAP19-7Q3SYF9 63 aa1.48□□□□□ -2.17
TMEM39A-204ENST00000468545 MT1EP04732 61 aa1.47□□□□□ -2.17
TMEM39A-204ENST00000468545 NEBP20929 6669 aa1.47□□□□□ -2.17
TMEM39A-204ENST00000468545 MDN1Q9NU22 5596 aa1.47□□□□□ -2.17
TMEM39A-204ENST00000468545 SPRR2EP22531 72 aa1.46□□□□□ -2.18
TMEM39A-204ENST00000468545 SPRR2BP35325 72 aa1.46□□□□□ -2.18
TMEM39A-204ENST00000468545 SPRR2AP35326 72 aa1.46□□□□□ -2.18
TMEM39A-204ENST00000468545 LUZP6Q538Z0 58 aa1.45□□□□□ -2.18
TMEM39A-204ENST00000468545 MT1LQ93083 61 aa1.44□□□□□ -2.18
TMEM39A-204ENST00000468545 KRTAP19-3Q7Z4W3 81 aa1.43□□□□□ -2.18
TMEM39A-204ENST00000468545 MT1GP13640 62 aa1.41□□□□□ -2.18
TMEM39A-204ENST00000468545 KRTAP5-7Q6L8G8 165 aa1.41□□□□□ -2.18
TMEM39A-204ENST00000468545 SPRR2DP22532 72 aa1.4□□□□□ -2.19
TMEM39A-204ENST00000468545 MT1MQ8N339 61 aa1.4□□□□□ -2.19
TMEM39A-204ENST00000468545 MUC19Q7Z5P9 8384 aa1.38□□□□□ -2.19
TMEM39A-204ENST00000468545 KRTAP2-3P0C7H8 128 aa1.34□□□□□ -2.19
TMEM39A-204ENST00000468545 KRTAP2-4Q9BYR9 128 aa1.34□□□□□ -2.19
TMEM39A-204ENST00000468545 DSTQ03001 7570 aaKnown RBP1.34□□□□□ -2.19
TMEM39A-204ENST00000468545 KRTAP20-1Q3LI63 56 aa1.33□□□□□ -2.2
TMEM39A-204ENST00000468545 KRTAP12-4P60329 112 aa1.32□□□□□ -2.2
TMEM39A-204ENST00000468545 KRTAP2-1Q9BYU5 128 aa1.3□□□□□ -2.2
TMEM39A-204ENST00000468545 SYNE1Q8NF91 8797 aaKnown RBP1.26□□□□□ -2.21
TMEM39A-204ENST00000468545 MT4P47944 62 aa1.24□□□□□ -2.21
TMEM39A-204ENST00000468545 KRTAP21-2Q3LI59 83 aa1.23□□□□□ -2.21
TMEM39A-204ENST00000468545 MT1AP04731 61 aa1.22□□□□□ -2.21
TMEM39A-204ENST00000468545 KRTAP6-1Q3LI64 71 aa1.22□□□□□ -2.21
TMEM39A-204ENST00000468545 HMCN1Q96RW7 5635 aa1.17□□□□□ -2.22
TMEM39A-204ENST00000468545 KRTAP20-2Q3LI61 65 aa1.15□□□□□ -2.23
TMEM39A-204ENST00000468545 KRTAP6-2Q3LI66 62 aa1.14□□□□□ -2.23
TMEM39A-204ENST00000468545 AHNAK2Q8IVF2 5795 aa1.11□□□□□ -2.23
TMEM39A-204ENST00000468545 GPR98Q8WXG9 6306 aa1.09□□□□□ -2.23
TMEM39A-204ENST00000468545 INE1O15225 51 aa1.06□□□□□ -2.24
TMEM39A-204ENST00000468545 KRTAP5-10Q6L8G5 202 aa1□□□□□ -2.25
TMEM39A-204ENST00000468545 MUC5ACP98088 5654 aa1□□□□□ -2.25
TMEM39A-204ENST00000468545 AHNAKQ09666 5890 aaKnown RBP0.91□□□□□ -2.26
TMEM39A-204ENST00000468545 MUC5BQ9HC84 5762 aaPredicted RBP0.89□□□□□ -2.27
TMEM39A-204ENST00000468545 PRM1P04553 51 aa0.86□□□□□ -2.27
TMEM39A-204ENST00000468545 PHGR1C9JFL3 82 aa0.68□□□□□ -2.3
TMEM39A-204ENST00000468545 MUC16Q8WXI7 14507 aa0.58□□□□□ -2.32
TMEM39A-204ENST00000468545 KRTAP21-1Q3LI58 79 aa0.49□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 88.4 ms