RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 KRTAP12-3P60328 96 aa2.86□□□□□ -1.95
USP48-206ENST00000464577 KRTAP10-5P60370 271 aa2.86□□□□□ -1.95
USP48-206ENST00000464577 HMCN2Q8NDA2 5059 aa2.86□□□□□ -1.95
USP48-206ENST00000464577 MT1XP80297 61 aa2.85□□□□□ -1.95
USP48-206ENST00000464577 KRTAP10-12P60413 245 aa2.84□□□□□ -1.95
USP48-206ENST00000464577 MT1BP07438 61 aa2.84□□□□□ -1.95
USP48-206ENST00000464577 KRTAP5-1Q6L8H4 278 aa2.83□□□□□ -1.96
USP48-206ENST00000464577 FAT4Q6V0I7 4981 aa2.8□□□□□ -1.96
USP48-206ENST00000464577 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
USP48-206ENST00000464577 LCE1AQ5T7P2 110 aa2.74□□□□□ -1.97
USP48-206ENST00000464577 UBR4Q5T4S7 5183 aa2.74□□□□□ -1.97
USP48-206ENST00000464577 LCE1EQ5T753 118 aa2.73□□□□□ -1.97
USP48-206ENST00000464577 RNF213Q63HN8 5207 aa2.72□□□□□ -1.97
USP48-206ENST00000464577 LCE3CQ5T5A8 94 aa2.7□□□□□ -1.98
USP48-206ENST00000464577 KRTAP19-5Q3LI72 72 aa2.68□□□□□ -1.98
USP48-206ENST00000464577 HMCN1Q96RW7 5635 aa2.62□□□□□ -1.99
USP48-206ENST00000464577 KRTAP2-3P0C7H8 128 aa2.61□□□□□ -1.99
USP48-206ENST00000464577 KRTAP2-4Q9BYR9 128 aa2.61□□□□□ -1.99
USP48-206ENST00000464577 KRTAP2-1Q9BYU5 128 aa2.61□□□□□ -1.99
USP48-206ENST00000464577 KRTAP9-6A8MVA2 160 aa2.59□□□□□ -1.99
USP48-206ENST00000464577 KRTAP2-2Q9BYT5 123 aa2.55□□□□□ -2
USP48-206ENST00000464577 KRTAP19-7Q3SYF9 63 aa2.54□□□□□ -2
USP48-206ENST00000464577 MT3P25713 68 aa2.53□□□□□ -2.01
USP48-206ENST00000464577 MT1LQ93083 61 aa2.48□□□□□ -2.01
USP48-206ENST00000464577 MT1EP04732 61 aa2.46□□□□□ -2.01
USP48-206ENST00000464577 KRTAP5-2Q701N4 177 aa2.45□□□□□ -2.02
USP48-206ENST00000464577 KMT2DO14686 5537 aa2.41□□□□□ -2.02
USP48-206ENST00000464577 KRTAP4-3Q9BYR4 195 aa2.38□□□□□ -2.03
USP48-206ENST00000464577 LCE1FQ5T754 118 aa2.38□□□□□ -2.03
USP48-206ENST00000464577 USH2AO75445 5202 aa2.37□□□□□ -2.03
USP48-206ENST00000464577 OBSCNQ5VST9 7968 aa2.34□□□□□ -2.03
USP48-206ENST00000464577 KRTAP19-6Q3LI70 58 aa2.3□□□□□ -2.04
USP48-206ENST00000464577 MT1GP13640 62 aa2.29□□□□□ -2.04
USP48-206ENST00000464577 MT1MQ8N339 61 aa2.29□□□□□ -2.04
USP48-206ENST00000464577 KRTAP12-4P60329 112 aa2.29□□□□□ -2.04
USP48-206ENST00000464577 SSPOA2VEC9 5147 aa2.29□□□□□ -2.04
USP48-206ENST00000464577 KRTAP19-3Q7Z4W3 81 aa2.27□□□□□ -2.05
USP48-206ENST00000464577 CRCT1Q9UGL9 99 aa2.2□□□□□ -2.06
USP48-206ENST00000464577 MT1AP04731 61 aa2.19□□□□□ -2.06
USP48-206ENST00000464577 KRTAP5-8O75690 187 aa2.17□□□□□ -2.06
USP48-206ENST00000464577 FCGBPQ9Y6R7 5405 aaPredicted RBP2.13□□□□□ -2.07
USP48-206ENST00000464577 LCE3EQ5T5B0 92 aa2.1□□□□□ -2.07
USP48-206ENST00000464577 LCE3DQ9BYE3 92 aa2.1□□□□□ -2.07
USP48-206ENST00000464577 MUC12Q9UKN1 5478 aa2.09□□□□□ -2.07
USP48-206ENST00000464577 KRTAP6-1Q3LI64 71 aa2.09□□□□□ -2.07
USP48-206ENST00000464577 SPRR2FQ96RM1 72 aa2.08□□□□□ -2.08
USP48-206ENST00000464577 KRTAP5-5Q701N2 237 aaPredicted RBP2.07□□□□□ -2.08
USP48-206ENST00000464577 PRM1P04553 51 aa2.05□□□□□ -2.08
USP48-206ENST00000464577 SYNE1Q8NF91 8797 aaKnown RBP1.98□□□□□ -2.09
USP48-206ENST00000464577 KRTAP6-2Q3LI66 62 aa1.95□□□□□ -2.1
USP48-206ENST00000464577 FSIP2Q5CZC0 6907 aa1.94□□□□□ -2.1
USP48-206ENST00000464577 DSTQ03001 7570 aaKnown RBP1.94□□□□□ -2.1
USP48-206ENST00000464577 KRTAP6-3Q3LI67 103 aa1.91□□□□□ -2.1
USP48-206ENST00000464577 MUC5BQ9HC84 5762 aaPredicted RBP1.89□□□□□ -2.11
USP48-206ENST00000464577 MACF1Q9UPN3 7388 aaKnown RBP1.86□□□□□ -2.11
USP48-206ENST00000464577 SPRR2EP22531 72 aa1.86□□□□□ -2.11
USP48-206ENST00000464577 SPRR2BP35325 72 aa1.86□□□□□ -2.11
USP48-206ENST00000464577 SPRR2AP35326 72 aa1.86□□□□□ -2.11
USP48-206ENST00000464577 MDN1Q9NU22 5596 aa1.81□□□□□ -2.12
USP48-206ENST00000464577 SYNE2Q8WXH0 6885 aaKnown RBP1.8□□□□□ -2.12
USP48-206ENST00000464577 SPRR2DP22532 72 aa1.78□□□□□ -2.13
USP48-206ENST00000464577 LCE1CQ5T751 118 aa1.71□□□□□ -2.13
USP48-206ENST00000464577 LCE1BQ5T7P3 118 aa1.71□□□□□ -2.13
USP48-206ENST00000464577 KRTAP20-1Q3LI63 56 aa1.7□□□□□ -2.14
USP48-206ENST00000464577 GPR98Q8WXG9 6306 aa1.67□□□□□ -2.14
USP48-206ENST00000464577 NEBP20929 6669 aa1.64□□□□□ -2.15
USP48-206ENST00000464577 KRTAP20-2Q3LI61 65 aa1.59□□□□□ -2.16
USP48-206ENST00000464577 MUC5ACP98088 5654 aa1.56□□□□□ -2.16
USP48-206ENST00000464577 MT4P47944 62 aa1.54□□□□□ -2.16
USP48-206ENST00000464577 KRTAP5-10Q6L8G5 202 aa1.53□□□□□ -2.16
USP48-206ENST00000464577 MUC19Q7Z5P9 8384 aa1.42□□□□□ -2.18
USP48-206ENST00000464577 KRTAP21-2Q3LI59 83 aa1.35□□□□□ -2.19
USP48-206ENST00000464577 AHNAKQ09666 5890 aaKnown RBP1.35□□□□□ -2.19
USP48-206ENST00000464577 KRTAP5-7Q6L8G8 165 aa1.35□□□□□ -2.19
USP48-206ENST00000464577 KRTAP21-1Q3LI58 79 aa1.33□□□□□ -2.2
USP48-206ENST00000464577 AHNAK2Q8IVF2 5795 aa1.31□□□□□ -2.2
USP48-206ENST00000464577 PHGR1C9JFL3 82 aa1.04□□□□□ -2.24
USP48-206ENST00000464577 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 79.8 ms