RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 MT1LQ93083 61 aa5.13□□□□□ -1.59
HDAC6-213ENST00000462730 SPRR2FQ96RM1 72 aa5.09□□□□□ -1.59
HDAC6-213ENST00000462730 SYNE2Q8WXH0 6885 aaKnown RBP5.09□□□□□ -1.59
HDAC6-213ENST00000462730 MUC12Q9UKN1 5478 aa5.09□□□□□ -1.59
HDAC6-213ENST00000462730 LOC100996750A0A140TA64 210 aa5.07□□□□□ -1.6
HDAC6-213ENST00000462730 KRTAP4-6Q9BYQ5 205 aa5.07□□□□□ -1.6
HDAC6-213ENST00000462730 KRTAP19-4Q3LI73 84 aa5.04□□□□□ -1.6
HDAC6-213ENST00000462730 KRTAP4-7Q9BYR0 210 aa5.02□□□□□ -1.61
HDAC6-213ENST00000462730 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.02□□□□□ -1.61
HDAC6-213ENST00000462730 KRTAP5-9P26371 169 aa5□□□□□ -1.61
HDAC6-213ENST00000462730 KRTAP19-3Q7Z4W3 81 aa4.99□□□□□ -1.61
HDAC6-213ENST00000462730 MT1GP13640 62 aa4.93□□□□□ -1.62
HDAC6-213ENST00000462730 KRTAP9-6A8MVA2 160 aa4.91□□□□□ -1.62
HDAC6-213ENST00000462730 MDN1Q9NU22 5596 aa4.9□□□□□ -1.62
HDAC6-213ENST00000462730 LCE5AQ5TCM9 118 aa4.9□□□□□ -1.63
HDAC6-213ENST00000462730 MT1MQ8N339 61 aa4.9□□□□□ -1.63
HDAC6-213ENST00000462730 KRTAP6-3Q3LI67 103 aa4.87□□□□□ -1.63
HDAC6-213ENST00000462730 LCE1AQ5T7P2 110 aa4.85□□□□□ -1.63
HDAC6-213ENST00000462730 KRTAP4-3Q9BYR4 195 aa4.84□□□□□ -1.63
HDAC6-213ENST00000462730 SPRR2EP22531 72 aa4.82□□□□□ -1.64
HDAC6-213ENST00000462730 SPRR2BP35325 72 aa4.82□□□□□ -1.64
HDAC6-213ENST00000462730 SPRR2AP35326 72 aa4.82□□□□□ -1.64
HDAC6-213ENST00000462730 KRTAP2-3P0C7H8 128 aa4.78□□□□□ -1.64
HDAC6-213ENST00000462730 KRTAP2-4Q9BYR9 128 aa4.78□□□□□ -1.64
HDAC6-213ENST00000462730 KRTAP2-1Q9BYU5 128 aa4.78□□□□□ -1.64
HDAC6-213ENST00000462730 KRTAP9-7A8MTY7 169 aa4.73□□□□□ -1.65
HDAC6-213ENST00000462730 DSTQ03001 7570 aaKnown RBP4.71□□□□□ -1.66
HDAC6-213ENST00000462730 SPRR2DP22532 72 aa4.64□□□□□ -1.67
HDAC6-213ENST00000462730 NEBP20929 6669 aa4.53□□□□□ -1.68
HDAC6-213ENST00000462730 LCE3BQ5TA77 95 aa4.45□□□□□ -1.7
HDAC6-213ENST00000462730 KRTAP5-5Q701N2 237 aaPredicted RBP4.42□□□□□ -1.7
HDAC6-213ENST00000462730 MT1AP04731 61 aa4.34□□□□□ -1.71
HDAC6-213ENST00000462730 KRTAP6-1Q3LI64 71 aa4.33□□□□□ -1.72
HDAC6-213ENST00000462730 KRTAP4-12Q9BQ66 201 aa4.28□□□□□ -1.72
HDAC6-213ENST00000462730 SYNE1Q8NF91 8797 aaKnown RBP4.22□□□□□ -1.73
HDAC6-213ENST00000462730 KRTAP12-4P60329 112 aa4.2□□□□□ -1.74
HDAC6-213ENST00000462730 KRTAP20-1Q3LI63 56 aa4.18□□□□□ -1.74
HDAC6-213ENST00000462730 KRTAP5-4Q6L8H1 288 aa4.18□□□□□ -1.74
HDAC6-213ENST00000462730 KRTAP2-2Q9BYT5 123 aa4.17□□□□□ -1.74
HDAC6-213ENST00000462730 LCE4AQ5TA78 99 aa4.14□□□□□ -1.75
HDAC6-213ENST00000462730 KRTAP9-4Q9BYQ2 154 aa4.11□□□□□ -1.75
HDAC6-213ENST00000462730 KRTAP5-3Q6L8H2 238 aa4.07□□□□□ -1.76
HDAC6-213ENST00000462730 KRTAP4-9Q9BYQ8 210 aa4.07□□□□□ -1.76
HDAC6-213ENST00000462730 MT4P47944 62 aa4.05□□□□□ -1.76
HDAC6-213ENST00000462730 KRTAP9-9Q9BYP9 154 aa4□□□□□ -1.77
HDAC6-213ENST00000462730 KRTAP6-2Q3LI66 62 aa3.96□□□□□ -1.78
HDAC6-213ENST00000462730 LCE1DQ5T752 114 aa3.96□□□□□ -1.78
HDAC6-213ENST00000462730 KRTAP20-2Q3LI61 65 aa3.93□□□□□ -1.78
HDAC6-213ENST00000462730 HMCN1Q96RW7 5635 aa3.92□□□□□ -1.78
HDAC6-213ENST00000462730 MT3P25713 68 aa3.91□□□□□ -1.78
HDAC6-213ENST00000462730 LCE3DQ9BYE3 92 aa3.9□□□□□ -1.79
HDAC6-213ENST00000462730 KRTAP4-2Q9BYR5 136 aa3.88□□□□□ -1.79
HDAC6-213ENST00000462730 LCE3EQ5T5B0 92 aa3.87□□□□□ -1.79
HDAC6-213ENST00000462730 KRTAP5-2Q701N4 177 aa3.8□□□□□ -1.8
HDAC6-213ENST00000462730 PRM1P04553 51 aa3.74□□□□□ -1.81
HDAC6-213ENST00000462730 OBSCNQ5VST9 7968 aa3.69□□□□□ -1.82
HDAC6-213ENST00000462730 KRTAP4-11Q9BYQ6 195 aa3.62□□□□□ -1.83
HDAC6-213ENST00000462730 AHNAK2Q8IVF2 5795 aa3.4□□□□□ -1.87
HDAC6-213ENST00000462730 LCE1EQ5T753 118 aa3.39□□□□□ -1.87
HDAC6-213ENST00000462730 GPR98Q8WXG9 6306 aa3.36□□□□□ -1.87
HDAC6-213ENST00000462730 KRTAP5-1Q6L8H4 278 aa3.29□□□□□ -1.88
HDAC6-213ENST00000462730 KRTAP5-8O75690 187 aa3.27□□□□□ -1.89
HDAC6-213ENST00000462730 KRTAP5-10Q6L8G5 202 aa3.25□□□□□ -1.89
HDAC6-213ENST00000462730 LCE1BQ5T7P3 118 aa3.21□□□□□ -1.9
HDAC6-213ENST00000462730 MUC5ACP98088 5654 aa3.2□□□□□ -1.9
HDAC6-213ENST00000462730 LCE1CQ5T751 118 aa3.15□□□□□ -1.91
HDAC6-213ENST00000462730 KRTAP5-7Q6L8G8 165 aa3.14□□□□□ -1.91
HDAC6-213ENST00000462730 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.95□□□□□ -1.94
HDAC6-213ENST00000462730 LCE1FQ5T754 118 aa2.94□□□□□ -1.94
HDAC6-213ENST00000462730 MUC5BQ9HC84 5762 aaPredicted RBP2.82□□□□□ -1.96
HDAC6-213ENST00000462730 KRTAP21-2Q3LI59 83 aa2.81□□□□□ -1.96
HDAC6-213ENST00000462730 KRTAP5-11Q6L8G4 156 aa2.79□□□□□ -1.96
HDAC6-213ENST00000462730 AHNAKQ09666 5890 aaKnown RBP2.63□□□□□ -1.99
HDAC6-213ENST00000462730 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
HDAC6-213ENST00000462730 KRTAP21-1Q3LI58 79 aa2.5□□□□□ -2.01
HDAC6-213ENST00000462730 PHGR1C9JFL3 82 aa2.4□□□□□ -2.03
HDAC6-213ENST00000462730 MUC19Q7Z5P9 8384 aa2.23□□□□□ -2.05
HDAC6-213ENST00000462730 MUC16Q8WXI7 14507 aa1.58□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 44.3 ms