RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 KRTAP2-2Q9BYT5 123 aa4.59□□□□□ -1.67
SCN9A-205ENST00000454569 FCGBPQ9Y6R7 5405 aaPredicted RBP4.59□□□□□ -1.68
SCN9A-205ENST00000454569 CRCT1Q9UGL9 99 aa4.58□□□□□ -1.68
SCN9A-205ENST00000454569 C10orf95Q9H7T3 257 aa4.48□□□□□ -1.69
SCN9A-205ENST00000454569 PRO2289Q9P1D8 64 aa4.44□□□□□ -1.7
SCN9A-205ENST00000454569 KRTAP10-7P60409 375 aaPredicted RBP4.43□□□□□ -1.7
SCN9A-205ENST00000454569 KMT2DO14686 5537 aa4.41□□□□□ -1.7
SCN9A-205ENST00000454569 LCE1FQ5T754 118 aa4.4□□□□□ -1.71
SCN9A-205ENST00000454569 MACF1Q9UPN3 7388 aaKnown RBP4.37□□□□□ -1.71
SCN9A-205ENST00000454569 TNP1P09430 55 aa4.37□□□□□ -1.71
SCN9A-205ENST00000454569 KRTAP10-12P60413 245 aa4.34□□□□□ -1.71
SCN9A-205ENST00000454569 SYNE2Q8WXH0 6885 aaKnown RBP4.28□□□□□ -1.72
SCN9A-205ENST00000454569 PP632Q6XCG6 107 aa4.23□□□□□ -1.73
SCN9A-205ENST00000454569 LCE3AQ5TA76 89 aa4.22□□□□□ -1.73
SCN9A-205ENST00000454569 KRTAP8-1Q8IUC2 63 aa4.16□□□□□ -1.74
SCN9A-205ENST00000454569 MUC12Q9UKN1 5478 aa4.13□□□□□ -1.75
SCN9A-205ENST00000454569 KRTAP19-7Q3SYF9 63 aa4.12□□□□□ -1.75
SCN9A-205ENST00000454569 KRTAP19-5Q3LI72 72 aa4.11□□□□□ -1.75
SCN9A-205ENST00000454569 KRTAP5-9P26371 169 aa4.08□□□□□ -1.76
SCN9A-205ENST00000454569 KRTAP6-3Q3LI67 103 aa4.08□□□□□ -1.76
SCN9A-205ENST00000454569 SPRR2FQ96RM1 72 aa4.06□□□□□ -1.76
SCN9A-205ENST00000454569 LCE3CQ5T5A8 94 aa4.06□□□□□ -1.76
SCN9A-205ENST00000454569 MT1EP04732 61 aa4.03□□□□□ -1.76
SCN9A-205ENST00000454569 MDN1Q9NU22 5596 aa4.02□□□□□ -1.77
SCN9A-205ENST00000454569 KRTAP12-3P60328 96 aa4.02□□□□□ -1.77
SCN9A-205ENST00000454569 INE1O15225 51 aa3.99□□□□□ -1.77
SCN9A-205ENST00000454569 MT1LQ93083 61 aa3.93□□□□□ -1.78
SCN9A-205ENST00000454569 NEBP20929 6669 aa3.91□□□□□ -1.78
SCN9A-205ENST00000454569 SPRR2EP22531 72 aa3.9□□□□□ -1.78
SCN9A-205ENST00000454569 SPRR2BP35325 72 aa3.9□□□□□ -1.78
SCN9A-205ENST00000454569 SPRR2AP35326 72 aa3.9□□□□□ -1.78
SCN9A-205ENST00000454569 KRTAP19-3Q7Z4W3 81 aa3.89□□□□□ -1.79
SCN9A-205ENST00000454569 LCE1EQ5T753 118 aa3.84□□□□□ -1.8
SCN9A-205ENST00000454569 MT1GP13640 62 aa3.82□□□□□ -1.8
SCN9A-205ENST00000454569 MT1MQ8N339 61 aa3.81□□□□□ -1.8
SCN9A-205ENST00000454569 KRTAP4-3Q9BYR4 195 aa3.8□□□□□ -1.8
SCN9A-205ENST00000454569 DSTQ03001 7570 aaKnown RBP3.77□□□□□ -1.81
SCN9A-205ENST00000454569 SPRR2DP22532 72 aa3.76□□□□□ -1.81
SCN9A-205ENST00000454569 SPRR5A0A1B0GTR4 108 aa3.75□□□□□ -1.81
SCN9A-205ENST00000454569 LCE3EQ5T5B0 92 aa3.71□□□□□ -1.82
SCN9A-205ENST00000454569 KRTAP5-11Q6L8G4 156 aa3.63□□□□□ -1.83
SCN9A-205ENST00000454569 KRTAP9-6A8MVA2 160 aa3.63□□□□□ -1.83
SCN9A-205ENST00000454569 KRTAP2-3P0C7H8 128 aa3.59□□□□□ -1.83
SCN9A-205ENST00000454569 KRTAP2-4Q9BYR9 128 aa3.59□□□□□ -1.83
SCN9A-205ENST00000454569 KRTAP20-1Q3LI63 56 aa3.58□□□□□ -1.84
SCN9A-205ENST00000454569 KRTAP2-1Q9BYU5 128 aa3.51□□□□□ -1.85
SCN9A-205ENST00000454569 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.47□□□□□ -1.85
SCN9A-205ENST00000454569 KRTAP5-5Q701N2 237 aaPredicted RBP3.46□□□□□ -1.86
SCN9A-205ENST00000454569 KRTAP5-4Q6L8H1 288 aa3.38□□□□□ -1.87
SCN9A-205ENST00000454569 SYNE1Q8NF91 8797 aaKnown RBP3.35□□□□□ -1.87
SCN9A-205ENST00000454569 KRTAP6-1Q3LI64 71 aa3.34□□□□□ -1.88
SCN9A-205ENST00000454569 MT1AP04731 61 aa3.32□□□□□ -1.88
SCN9A-205ENST00000454569 MT4P47944 62 aa3.3□□□□□ -1.88
SCN9A-205ENST00000454569 HMCN1Q96RW7 5635 aa3.26□□□□□ -1.89
SCN9A-205ENST00000454569 KRTAP12-4P60329 112 aa3.18□□□□□ -1.9
SCN9A-205ENST00000454569 KRTAP20-2Q3LI61 65 aa3.17□□□□□ -1.9
SCN9A-205ENST00000454569 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
SCN9A-205ENST00000454569 KRTAP6-2Q3LI66 62 aa3.09□□□□□ -1.91
SCN9A-205ENST00000454569 KRTAP5-2Q701N4 177 aa3.04□□□□□ -1.92
SCN9A-205ENST00000454569 AHNAK2Q8IVF2 5795 aa2.99□□□□□ -1.93
SCN9A-205ENST00000454569 KRTAP5-1Q6L8H4 278 aa2.96□□□□□ -1.94
SCN9A-205ENST00000454569 OBSCNQ5VST9 7968 aa2.94□□□□□ -1.94
SCN9A-205ENST00000454569 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
SCN9A-205ENST00000454569 KRTAP5-10Q6L8G5 202 aa2.82□□□□□ -1.96
SCN9A-205ENST00000454569 GPR98Q8WXG9 6306 aa2.8□□□□□ -1.96
SCN9A-205ENST00000454569 KRTAP5-8O75690 187 aa2.7□□□□□ -1.98
SCN9A-205ENST00000454569 KRTAP5-7Q6L8G8 165 aa2.61□□□□□ -1.99
SCN9A-205ENST00000454569 MUC5ACP98088 5654 aa2.59□□□□□ -1.99
SCN9A-205ENST00000454569 LCE1CQ5T751 118 aa2.57□□□□□ -2
SCN9A-205ENST00000454569 LCE1BQ5T7P3 118 aa2.57□□□□□ -2
SCN9A-205ENST00000454569 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.02
SCN9A-205ENST00000454569 PRM1P04553 51 aa2.39□□□□□ -2.03
SCN9A-205ENST00000454569 AHNAKQ09666 5890 aaKnown RBP2.29□□□□□ -2.04
SCN9A-205ENST00000454569 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
SCN9A-205ENST00000454569 MUC19Q7Z5P9 8384 aa1.94□□□□□ -2.1
SCN9A-205ENST00000454569 PHGR1C9JFL3 82 aa1.89□□□□□ -2.11
SCN9A-205ENST00000454569 KRTAP21-1Q3LI58 79 aa1.65□□□□□ -2.15
SCN9A-205ENST00000454569 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 82.3 ms