RNA–Protein interactions for RNA: ENST00000445889.5

ERCC3-203, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 2

Gene ERCC3, Length 2,920 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-203ENST00000445889 LOC100996750A0A140TA64 210 aa4.81□□□□□ -1.64
ERCC3-203ENST00000445889 MT1EP04732 61 aa4.81□□□□□ -1.64
ERCC3-203ENST00000445889 FCGBPQ9Y6R7 5405 aaPredicted RBP4.81□□□□□ -1.64
ERCC3-203ENST00000445889 KRTAP4-3Q9BYR4 195 aa4.81□□□□□ -1.64
ERCC3-203ENST00000445889 CRCT1Q9UGL9 99 aa4.75□□□□□ -1.65
ERCC3-203ENST00000445889 MT1GP13640 62 aa4.69□□□□□ -1.66
ERCC3-203ENST00000445889 SYNE1Q8NF91 8797 aaKnown RBP4.62□□□□□ -1.67
ERCC3-203ENST00000445889 LCE2DQ5TA82 110 aaPredicted RBP4.59□□□□□ -1.67
ERCC3-203ENST00000445889 KRTAP19-4Q3LI73 84 aa4.57□□□□□ -1.68
ERCC3-203ENST00000445889 KRTAP19-6Q3LI70 58 aa4.51□□□□□ -1.69
ERCC3-203ENST00000445889 MT1MQ8N339 61 aa4.5□□□□□ -1.69
ERCC3-203ENST00000445889 KRTAP12-4P60329 112 aa4.48□□□□□ -1.69
ERCC3-203ENST00000445889 KRTAP19-3Q7Z4W3 81 aa4.45□□□□□ -1.7
ERCC3-203ENST00000445889 SYNE2Q8WXH0 6885 aaKnown RBP4.45□□□□□ -1.7
ERCC3-203ENST00000445889 OBSCNQ5VST9 7968 aa4.44□□□□□ -1.7
ERCC3-203ENST00000445889 KRTAP4-9Q9BYQ8 210 aa4.42□□□□□ -1.7
ERCC3-203ENST00000445889 MACF1Q9UPN3 7388 aaKnown RBP4.42□□□□□ -1.7
ERCC3-203ENST00000445889 LCE3BQ5TA77 95 aa4.4□□□□□ -1.71
ERCC3-203ENST00000445889 SPRR2FQ96RM1 72 aa4.36□□□□□ -1.71
ERCC3-203ENST00000445889 MDN1Q9NU22 5596 aa4.33□□□□□ -1.72
ERCC3-203ENST00000445889 KRTAP9-2Q9BYQ4 174 aa4.33□□□□□ -1.72
ERCC3-203ENST00000445889 LCE5AQ5TCM9 118 aa4.27□□□□□ -1.73
ERCC3-203ENST00000445889 KRTAP6-1Q3LI64 71 aa4.19□□□□□ -1.74
ERCC3-203ENST00000445889 KRTAP9-6A0A140TA67 174 aa4.11□□□□□ -1.75
ERCC3-203ENST00000445889 KRTAP9-7A8MTY7 169 aa4.08□□□□□ -1.76
ERCC3-203ENST00000445889 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
ERCC3-203ENST00000445889 MT1AP04731 61 aa4.04□□□□□ -1.76
ERCC3-203ENST00000445889 LCE3EQ5T5B0 92 aa4.01□□□□□ -1.77
ERCC3-203ENST00000445889 PRM1P04553 51 aa3.99□□□□□ -1.77
ERCC3-203ENST00000445889 KRTAP5-5Q701N2 237 aaPredicted RBP3.98□□□□□ -1.77
ERCC3-203ENST00000445889 LCE1AQ5T7P2 110 aa3.94□□□□□ -1.78
ERCC3-203ENST00000445889 SPRR2EP22531 72 aa3.87□□□□□ -1.79
ERCC3-203ENST00000445889 SPRR2BP35325 72 aa3.87□□□□□ -1.79
ERCC3-203ENST00000445889 SPRR2AP35326 72 aa3.87□□□□□ -1.79
ERCC3-203ENST00000445889 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.81□□□□□ -1.8
ERCC3-203ENST00000445889 KRTAP5-9P26371 169 aa3.81□□□□□ -1.8
ERCC3-203ENST00000445889 KRTAP6-2Q3LI66 62 aa3.81□□□□□ -1.8
ERCC3-203ENST00000445889 KRTAP9-4Q9BYQ2 154 aa3.77□□□□□ -1.81
ERCC3-203ENST00000445889 SPRR2DP22532 72 aa3.67□□□□□ -1.82
ERCC3-203ENST00000445889 MT3P25713 68 aa3.59□□□□□ -1.83
ERCC3-203ENST00000445889 KRTAP6-3Q3LI67 103 aa3.58□□□□□ -1.84
ERCC3-203ENST00000445889 KRTAP2-2Q9BYT5 123 aa3.48□□□□□ -1.85
ERCC3-203ENST00000445889 NEBP20929 6669 aa3.48□□□□□ -1.85
ERCC3-203ENST00000445889 KRTAP4-6Q9BYQ5 205 aa3.41□□□□□ -1.86
ERCC3-203ENST00000445889 MT4P47944 62 aa3.4□□□□□ -1.87
ERCC3-203ENST00000445889 KRTAP5-4Q6L8H1 288 aa3.3□□□□□ -1.88
ERCC3-203ENST00000445889 KRTAP20-1Q3LI63 56 aa3.25□□□□□ -1.89
ERCC3-203ENST00000445889 HMCN1Q96RW7 5635 aa3.22□□□□□ -1.89
ERCC3-203ENST00000445889 MUC5ACP98088 5654 aa3.22□□□□□ -1.89
ERCC3-203ENST00000445889 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
ERCC3-203ENST00000445889 KRTAP20-2Q3LI61 65 aa3.18□□□□□ -1.9
ERCC3-203ENST00000445889 LCE1DQ5T752 114 aa3.17□□□□□ -1.9
ERCC3-203ENST00000445889 LCE1BQ5T7P3 118 aa3.09□□□□□ -1.91
ERCC3-203ENST00000445889 LCE1EQ5T753 118 aa3.09□□□□□ -1.92
ERCC3-203ENST00000445889 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.92
ERCC3-203ENST00000445889 LCE4AQ5TA78 99 aa3.07□□□□□ -1.92
ERCC3-203ENST00000445889 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
ERCC3-203ENST00000445889 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
ERCC3-203ENST00000445889 KRTAP5-3Q6L8H2 238 aa2.96□□□□□ -1.93
ERCC3-203ENST00000445889 KRTAP5-10Q6L8G5 202 aa2.92□□□□□ -1.94
ERCC3-203ENST00000445889 MUC19Q7Z5P9 8384 aa2.86□□□□□ -1.95
ERCC3-203ENST00000445889 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
ERCC3-203ENST00000445889 KRTAP4-2Q9BYR5 136 aa2.77□□□□□ -1.97
ERCC3-203ENST00000445889 GPR98Q8WXG9 6306 aa2.71□□□□□ -1.98
ERCC3-203ENST00000445889 LCE1CQ5T751 118 aa2.68□□□□□ -1.98
ERCC3-203ENST00000445889 KRTAP4-4Q9BYR3 166 aa2.66□□□□□ -1.98
ERCC3-203ENST00000445889 KRTAP21-2Q3LI59 83 aa2.64□□□□□ -1.99
ERCC3-203ENST00000445889 AHNAK2Q8IVF2 5795 aa2.63□□□□□ -1.99
ERCC3-203ENST00000445889 MUC5BQ9HC84 5762 aaPredicted RBP2.55□□□□□ -2
ERCC3-203ENST00000445889 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
ERCC3-203ENST00000445889 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.48□□□□□ -2.01
ERCC3-203ENST00000445889 KRTAP5-8O75690 187 aa2.46□□□□□ -2.02
ERCC3-203ENST00000445889 KRTAP21-1Q3LI58 79 aa2.42□□□□□ -2.02
ERCC3-203ENST00000445889 KRTAP5-7Q6L8G8 165 aa2.41□□□□□ -2.02
ERCC3-203ENST00000445889 KRTAP5-11Q6L8G4 156 aa2.26□□□□□ -2.05
ERCC3-203ENST00000445889 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
ERCC3-203ENST00000445889 PHGR1C9JFL3 82 aa2□□□□□ -2.09
ERCC3-203ENST00000445889 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 13.1 ms