RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CSMD1Q96PZ7 3565 aa0.72□□□□□ -2.29
CCDC88A-208ENST00000444458 H3BNG1 76 aa0.72□□□□□ -2.29
CCDC88A-208ENST00000444458 FAT1Q14517 4588 aa0.72□□□□□ -2.29
CCDC88A-208ENST00000444458 SMIM2Q9BVW6 85 aa0.72□□□□□ -2.29
CCDC88A-208ENST00000444458 DNAH8Q96JB1 4490 aa0.71□□□□□ -2.3
CCDC88A-208ENST00000444458 RPL39P5Q59GN2 51 aa0.71□□□□□ -2.3
CCDC88A-208ENST00000444458 WFDC10BQ8IUB3 73 aa0.71□□□□□ -2.3
CCDC88A-208ENST00000444458 SPRR2FQ96RM1 72 aa0.71□□□□□ -2.3
CCDC88A-208ENST00000444458 MGAQ8IWI9 3026 aa0.71□□□□□ -2.3
CCDC88A-208ENST00000444458 PRLHP81277 87 aa0.71□□□□□ -2.3
CCDC88A-208ENST00000444458 TTTY10Q9BZA0 68 aa0.71□□□□□ -2.3
CCDC88A-208ENST00000444458 CUBNO60494 3623 aa0.7□□□□□ -2.3
CCDC88A-208ENST00000444458 SVEP1Q4LDE5 3571 aa0.7□□□□□ -2.3
CCDC88A-208ENST00000444458 H3BUX3 64 aa0.69□□□□□ -2.3
CCDC88A-208ENST00000444458 POLR2KP53803 58 aaKnown RBP0.69□□□□□ -2.3
CCDC88A-208ENST00000444458 CSMD2Q7Z408 3487 aa0.69□□□□□ -2.3
CCDC88A-208ENST00000444458 KRTAP21-1Q3LI58 79 aa0.69□□□□□ -2.3
CCDC88A-208ENST00000444458 MUC17Q685J3 4493 aa0.68□□□□□ -2.3
CCDC88A-208ENST00000444458 TACC2O95359 2948 aa0.68□□□□□ -2.3
CCDC88A-208ENST00000444458 M0QY20 66 aa0.67□□□□□ -2.3
CCDC88A-208ENST00000444458 COL7A1Q02388 2944 aa0.67□□□□□ -2.3
CCDC88A-208ENST00000444458 MT1HL1P0DM35 61 aa0.67□□□□□ -2.3
CCDC88A-208ENST00000444458 LEAP2Q969E1 77 aa0.67□□□□□ -2.3
CCDC88A-208ENST00000444458 RHPN1-AS1Q9BWJ2 59 aa0.67□□□□□ -2.3
CCDC88A-208ENST00000444458 DEFB135Q30KP9 77 aa0.66□□□□□ -2.3
CCDC88A-208ENST00000444458 MUC19Q7Z5P9 8384 aa0.66□□□□□ -2.3
CCDC88A-208ENST00000444458 H3BSH0 61 aa0.66□□□□□ -2.3
CCDC88A-208ENST00000444458 NDUFA1O15239 70 aa0.66□□□□□ -2.3
CCDC88A-208ENST00000444458 NOP10Q9NPE3 64 aaKnown RBP0.65□□□□□ -2.31
CCDC88A-208ENST00000444458 LINC01556Q5JQF7 62 aa0.65□□□□□ -2.31
CCDC88A-208ENST00000444458 S4R3F8 94 aa0.65□□□□□ -2.31
CCDC88A-208ENST00000444458 RPS29P62273 56 aaKnown RBP0.64□□□□□ -2.31
CCDC88A-208ENST00000444458 KRTAP21-2Q3LI59 83 aa0.63□□□□□ -2.31
CCDC88A-208ENST00000444458 SPART-AS1P0CW21 52 aa0.63□□□□□ -2.31
CCDC88A-208ENST00000444458 IGLV5-48A0A075B6I7 105 aa0.63□□□□□ -2.31
CCDC88A-208ENST00000444458 DEFB131AP59861 70 aa0.62□□□□□ -2.31
CCDC88A-208ENST00000444458 A0A096LPF7 62 aa0.62□□□□□ -2.31
CCDC88A-208ENST00000444458 RPL39LQ96EH5 51 aaKnown RBP0.62□□□□□ -2.31
CCDC88A-208ENST00000444458 MUC16Q8WXI7 14507 aa0.6□□□□□ -2.31
CCDC88A-208ENST00000444458 DEFB136Q30KP8 78 aa0.6□□□□□ -2.31
CCDC88A-208ENST00000444458 APELAP0DMC3 54 aa0.6□□□□□ -2.31
CCDC88A-208ENST00000444458 RPL39P62891 51 aaKnown RBP0.6□□□□□ -2.31
CCDC88A-208ENST00000444458 MT1HP80294 61 aa0.59□□□□□ -2.32
CCDC88A-208ENST00000444458 SYNE1Q8NF91 8797 aaKnown RBP0.58□□□□□ -2.32
CCDC88A-208ENST00000444458 DEFB1P60022 68 aa0.58□□□□□ -2.32
CCDC88A-208ENST00000444458 KRTAP8-1Q8IUC2 63 aa0.58□□□□□ -2.32
CCDC88A-208ENST00000444458 KRTAP19-3Q7Z4W3 81 aa0.57□□□□□ -2.32
CCDC88A-208ENST00000444458 MMP24-AS1A0A0U1RRL7 71 aa0.56□□□□□ -2.32
CCDC88A-208ENST00000444458 CLPSL2Q6UWE3 100 aa0.56□□□□□ -2.32
CCDC88A-208ENST00000444458 A0A096LNI7 61 aa0.55□□□□□ -2.32
CCDC88A-208ENST00000444458 LPAP08519 4548 aa0.53□□□□□ -2.32
CCDC88A-208ENST00000444458 C9orf92A6NGG3 77 aa0.53□□□□□ -2.33
CCDC88A-208ENST00000444458 HTN1P15515 57 aa0.53□□□□□ -2.33
CCDC88A-208ENST00000444458 DEFB4AO15263 64 aa0.52□□□□□ -2.33
CCDC88A-208ENST00000444458 TOMM7Q9P0U1 55 aa0.52□□□□□ -2.33
CCDC88A-208ENST00000444458 KRTAP19-2Q3LHN2 52 aa0.52□□□□□ -2.33
CCDC88A-208ENST00000444458 MUC12Q9UKN1 5478 aa0.52□□□□□ -2.33
CCDC88A-208ENST00000444458 PRM1P04553 51 aa0.51□□□□□ -2.33
CCDC88A-208ENST00000444458 M0QZ58 72 aa0.5□□□□□ -2.33
CCDC88A-208ENST00000444458 HTN3P15516 51 aa0.5□□□□□ -2.33
CCDC88A-208ENST00000444458 TNP1P09430 55 aa0.49□□□□□ -2.33
CCDC88A-208ENST00000444458 MT2AP02795 61 aa0.47□□□□□ -2.33
CCDC88A-208ENST00000444458 KRTAP4-1Q9BYQ7 146 aa0.47□□□□□ -2.33
CCDC88A-208ENST00000444458 SPRR2GQ9BYE4 73 aa0.46□□□□□ -2.34
CCDC88A-208ENST00000444458 MT1FP04733 61 aa0.46□□□□□ -2.34
CCDC88A-208ENST00000444458 KRTAP19-8Q3LI54 63 aa0.46□□□□□ -2.34
CCDC88A-208ENST00000444458 KRTAP20-2Q3LI61 65 aa0.43□□□□□ -2.34
CCDC88A-208ENST00000444458 MT1BP07438 61 aa0.4□□□□□ -2.35
CCDC88A-208ENST00000444458 MT1XP80297 61 aa0.39□□□□□ -2.35
CCDC88A-208ENST00000444458 MT1EP04732 61 aa0.38□□□□□ -2.35
CCDC88A-208ENST00000444458 MT1GP13640 62 aa0.37□□□□□ -2.35
CCDC88A-208ENST00000444458 KRTAP19-7Q3SYF9 63 aa0.36□□□□□ -2.35
CCDC88A-208ENST00000444458 KRTAP19-5Q3LI72 72 aa0.35□□□□□ -2.35
CCDC88A-208ENST00000444458 MT1LQ93083 61 aa0.35□□□□□ -2.35
CCDC88A-208ENST00000444458 MT1MQ8N339 61 aa0.34□□□□□ -2.35
CCDC88A-208ENST00000444458 MT1AP04731 61 aa0.34□□□□□ -2.35
CCDC88A-208ENST00000444458 KRTAP6-2Q3LI66 62 aa0.31□□□□□ -2.36
CCDC88A-208ENST00000444458 KRTAP6-1Q3LI64 71 aa0.26□□□□□ -2.37
Retrieved 78 of 20,778 RNA–protein pairs in 79 ms