RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 LCE5AQ5TCM9 118 aa2.94□□□□□ -1.94
CDC42BPA-208ENST00000442054 KRTAP6-3Q3LI67 103 aa2.91□□□□□ -1.94
CDC42BPA-208ENST00000442054 SYNE2Q8WXH0 6885 aaKnown RBP2.91□□□□□ -1.94
CDC42BPA-208ENST00000442054 MACF1Q9UPN3 7388 aaKnown RBP2.91□□□□□ -1.94
CDC42BPA-208ENST00000442054 KRTAP4-8Q9BYQ9 185 aa2.9□□□□□ -1.94
CDC42BPA-208ENST00000442054 MT1XP80297 61 aa2.89□□□□□ -1.95
CDC42BPA-208ENST00000442054 LCE3AQ5TA76 89 aa2.87□□□□□ -1.95
CDC42BPA-208ENST00000442054 KRTAP4-8A0A0G2JLE6 195 aa2.85□□□□□ -1.95
CDC42BPA-208ENST00000442054 SPRR2DP22532 72 aa2.84□□□□□ -1.95
CDC42BPA-208ENST00000442054 KRTAP10-7P60409 375 aaPredicted RBP2.84□□□□□ -1.95
CDC42BPA-208ENST00000442054 KRTAP20-1Q3LI63 56 aa2.82□□□□□ -1.96
CDC42BPA-208ENST00000442054 KMT2DO14686 5537 aa2.8□□□□□ -1.96
CDC42BPA-208ENST00000442054 INE1O15225 51 aa2.79□□□□□ -1.96
CDC42BPA-208ENST00000442054 LCE3BQ5TA77 95 aa2.78□□□□□ -1.96
CDC42BPA-208ENST00000442054 KRTAP12-3P60328 96 aa2.73□□□□□ -1.97
CDC42BPA-208ENST00000442054 KRTAP2-3P0C7H8 128 aa2.72□□□□□ -1.97
CDC42BPA-208ENST00000442054 KRTAP2-4Q9BYR9 128 aa2.72□□□□□ -1.97
CDC42BPA-208ENST00000442054 KRTAP19-5Q3LI72 72 aa2.71□□□□□ -1.98
CDC42BPA-208ENST00000442054 NEBP20929 6669 aa2.65□□□□□ -1.99
CDC42BPA-208ENST00000442054 LCE1AQ5T7P2 110 aa2.64□□□□□ -1.99
CDC42BPA-208ENST00000442054 KRTAP5-9P26371 169 aa2.64□□□□□ -1.99
CDC42BPA-208ENST00000442054 KRTAP2-2Q9BYT5 123 aa2.64□□□□□ -1.99
CDC42BPA-208ENST00000442054 KRTAP2-1Q9BYU5 128 aa2.64□□□□□ -1.99
CDC42BPA-208ENST00000442054 KRTAP9-6A8MVA2 160 aa2.63□□□□□ -1.99
CDC42BPA-208ENST00000442054 MT1GP13640 62 aa2.63□□□□□ -1.99
CDC42BPA-208ENST00000442054 KRTAP19-3Q7Z4W3 81 aa2.63□□□□□ -1.99
CDC42BPA-208ENST00000442054 MUC12Q9UKN1 5478 aa2.62□□□□□ -1.99
CDC42BPA-208ENST00000442054 DSTQ03001 7570 aaKnown RBP2.61□□□□□ -1.99
CDC42BPA-208ENST00000442054 MDN1Q9NU22 5596 aa2.6□□□□□ -1.99
CDC42BPA-208ENST00000442054 KRTAP19-7Q3SYF9 63 aa2.6□□□□□ -1.99
CDC42BPA-208ENST00000442054 LCE1DQ5T752 114 aa2.6□□□□□ -1.99
CDC42BPA-208ENST00000442054 LCE3CQ5T5A8 94 aa2.6□□□□□ -1.99
CDC42BPA-208ENST00000442054 MT1EP04732 61 aa2.59□□□□□ -1.99
CDC42BPA-208ENST00000442054 LCE1FQ5T754 118 aa2.55□□□□□ -2
CDC42BPA-208ENST00000442054 MT4P47944 62 aa2.53□□□□□ -2
CDC42BPA-208ENST00000442054 MT1LQ93083 61 aa2.51□□□□□ -2.01
CDC42BPA-208ENST00000442054 MT1MQ8N339 61 aa2.5□□□□□ -2.01
CDC42BPA-208ENST00000442054 KRTAP4-9Q9BYQ8 210 aa2.49□□□□□ -2.01
CDC42BPA-208ENST00000442054 KRTAP4-7Q9BYR0 210 aa2.48□□□□□ -2.01
CDC42BPA-208ENST00000442054 KRTAP4-11Q9BYQ6 195 aa2.47□□□□□ -2.01
CDC42BPA-208ENST00000442054 KRTAP12-4P60329 112 aa2.47□□□□□ -2.01
CDC42BPA-208ENST00000442054 SYNE1Q8NF91 8797 aaKnown RBP2.47□□□□□ -2.01
CDC42BPA-208ENST00000442054 KRTAP4-3Q9BYR4 195 aa2.45□□□□□ -2.02
CDC42BPA-208ENST00000442054 MT3P25713 68 aa2.41□□□□□ -2.02
CDC42BPA-208ENST00000442054 OBSCNQ5VST9 7968 aa2.39□□□□□ -2.03
CDC42BPA-208ENST00000442054 GPR98Q8WXG9 6306 aa2.36□□□□□ -2.03
CDC42BPA-208ENST00000442054 KRTAP4-2Q9BYR5 136 aa2.35□□□□□ -2.03
CDC42BPA-208ENST00000442054 LCE1EQ5T753 118 aa2.34□□□□□ -2.04
CDC42BPA-208ENST00000442054 LCE3EQ5T5B0 92 aa2.21□□□□□ -2.06
CDC42BPA-208ENST00000442054 MT1AP04731 61 aa2.18□□□□□ -2.06
CDC42BPA-208ENST00000442054 KRTAP5-5Q701N2 237 aaPredicted RBP2.17□□□□□ -2.06
CDC42BPA-208ENST00000442054 KRTAP20-2Q3LI61 65 aa2.13□□□□□ -2.07
CDC42BPA-208ENST00000442054 KRTAP6-1Q3LI64 71 aa2.12□□□□□ -2.07
CDC42BPA-208ENST00000442054 HMCN1Q96RW7 5635 aa2.1□□□□□ -2.07
CDC42BPA-208ENST00000442054 KRTAP6-2Q3LI66 62 aa2.09□□□□□ -2.08
CDC42BPA-208ENST00000442054 KRTAP5-4Q6L8H1 288 aa2.07□□□□□ -2.08
CDC42BPA-208ENST00000442054 KRTAP5-3Q6L8H2 238 aa2.06□□□□□ -2.08
CDC42BPA-208ENST00000442054 LCE3DQ9BYE3 92 aa2.04□□□□□ -2.08
CDC42BPA-208ENST00000442054 LCE1BQ5T7P3 118 aa1.99□□□□□ -2.09
CDC42BPA-208ENST00000442054 AHNAK2Q8IVF2 5795 aa1.98□□□□□ -2.09
CDC42BPA-208ENST00000442054 KRTAP5-10Q6L8G5 202 aa1.9□□□□□ -2.1
CDC42BPA-208ENST00000442054 PRM1P04553 51 aa1.86□□□□□ -2.11
CDC42BPA-208ENST00000442054 KRTAP5-7Q6L8G8 165 aa1.84□□□□□ -2.12
CDC42BPA-208ENST00000442054 MUC5ACP98088 5654 aa1.83□□□□□ -2.12
CDC42BPA-208ENST00000442054 KRTAP5-8O75690 187 aa1.83□□□□□ -2.12
CDC42BPA-208ENST00000442054 KRTAP5-2Q701N4 177 aa1.79□□□□□ -2.12
CDC42BPA-208ENST00000442054 MUC5BQ9HC84 5762 aaPredicted RBP1.75□□□□□ -2.13
CDC42BPA-208ENST00000442054 MUC19Q7Z5P9 8384 aa1.73□□□□□ -2.13
CDC42BPA-208ENST00000442054 AHNAKQ09666 5890 aaKnown RBP1.73□□□□□ -2.13
CDC42BPA-208ENST00000442054 KRTAP5-11Q6L8G4 156 aa1.71□□□□□ -2.14
CDC42BPA-208ENST00000442054 LCE1CQ5T751 118 aa1.64□□□□□ -2.15
CDC42BPA-208ENST00000442054 KRTAP5-1Q6L8H4 278 aa1.63□□□□□ -2.15
CDC42BPA-208ENST00000442054 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.58□□□□□ -2.16
CDC42BPA-208ENST00000442054 KRTAP4-4Q9BYR3 166 aa1.44□□□□□ -2.18
CDC42BPA-208ENST00000442054 KRTAP21-2Q3LI59 83 aa1.43□□□□□ -2.18
CDC42BPA-208ENST00000442054 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
CDC42BPA-208ENST00000442054 KRTAP21-1Q3LI58 79 aa1.36□□□□□ -2.19
CDC42BPA-208ENST00000442054 MUC16Q8WXI7 14507 aa0.82□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 72.3 ms