RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 LCE3CQ5T5A8 94 aa3.14□□□□□ -1.91
HPS4-206ENST00000439453 MDN1Q9NU22 5596 aa3.13□□□□□ -1.91
HPS4-206ENST00000439453 KRTAP19-5Q3LI72 72 aa3.12□□□□□ -1.91
HPS4-206ENST00000439453 KRTAP4-8A0A0G2JLE6 195 aa3.1□□□□□ -1.91
HPS4-206ENST00000439453 KRTAP4-8Q9BYQ9 185 aa3.1□□□□□ -1.91
HPS4-206ENST00000439453 NEBP20929 6669 aa3.09□□□□□ -1.92
HPS4-206ENST00000439453 KRTAP9-6A8MVA2 160 aa3.06□□□□□ -1.92
HPS4-206ENST00000439453 KRTAP2-3P0C7H8 128 aa3.02□□□□□ -1.93
HPS4-206ENST00000439453 KRTAP2-4Q9BYR9 128 aa3.02□□□□□ -1.93
HPS4-206ENST00000439453 KRTAP2-1Q9BYU5 128 aa3.02□□□□□ -1.93
HPS4-206ENST00000439453 DSTQ03001 7570 aaKnown RBP3.02□□□□□ -1.93
HPS4-206ENST00000439453 SPRR2FQ96RM1 72 aa3□□□□□ -1.93
HPS4-206ENST00000439453 OBSCNQ5VST9 7968 aa2.98□□□□□ -1.93
HPS4-206ENST00000439453 LCE1AQ5T7P2 110 aa2.98□□□□□ -1.93
HPS4-206ENST00000439453 KRTAP19-7Q3SYF9 63 aa2.95□□□□□ -1.94
HPS4-206ENST00000439453 KRTAP4-7Q9BYR0 210 aa2.94□□□□□ -1.94
HPS4-206ENST00000439453 SPRR2EP22531 72 aa2.94□□□□□ -1.94
HPS4-206ENST00000439453 SPRR2BP35325 72 aa2.94□□□□□ -1.94
HPS4-206ENST00000439453 SPRR2AP35326 72 aa2.94□□□□□ -1.94
HPS4-206ENST00000439453 MT1EP04732 61 aa2.89□□□□□ -1.95
HPS4-206ENST00000439453 KRTAP20-1Q3LI63 56 aa2.88□□□□□ -1.95
HPS4-206ENST00000439453 KRTAP19-4Q3LI73 84 aa2.87□□□□□ -1.95
HPS4-206ENST00000439453 MT1LQ93083 61 aa2.85□□□□□ -1.95
HPS4-206ENST00000439453 LCE5AQ5TCM9 118 aa2.84□□□□□ -1.95
HPS4-206ENST00000439453 SPRR2DP22532 72 aa2.83□□□□□ -1.96
HPS4-206ENST00000439453 KRTAP19-3Q7Z4W3 81 aa2.81□□□□□ -1.96
HPS4-206ENST00000439453 SYNE1Q8NF91 8797 aaKnown RBP2.8□□□□□ -1.96
HPS4-206ENST00000439453 KRTAP12-4P60329 112 aa2.79□□□□□ -1.96
HPS4-206ENST00000439453 LCE3BQ5TA77 95 aa2.76□□□□□ -1.97
HPS4-206ENST00000439453 KRTAP2-2Q9BYT5 123 aa2.75□□□□□ -1.97
HPS4-206ENST00000439453 LOC100996750A0A140TA64 210 aa2.74□□□□□ -1.97
HPS4-206ENST00000439453 MT1MQ8N339 61 aa2.74□□□□□ -1.97
HPS4-206ENST00000439453 MT1GP13640 62 aa2.73□□□□□ -1.97
HPS4-206ENST00000439453 KRTAP4-3Q9BYR4 195 aa2.7□□□□□ -1.98
HPS4-206ENST00000439453 KRTAP5-4Q6L8H1 288 aa2.58□□□□□ -2
HPS4-206ENST00000439453 KRTAP5-5Q701N2 237 aaPredicted RBP2.56□□□□□ -2
HPS4-206ENST00000439453 KRTAP4-9Q9BYQ8 210 aa2.56□□□□□ -2
HPS4-206ENST00000439453 HMCN1Q96RW7 5635 aa2.54□□□□□ -2
HPS4-206ENST00000439453 LCE1DQ5T752 114 aa2.53□□□□□ -2
HPS4-206ENST00000439453 LCE4AQ5TA78 99 aa2.52□□□□□ -2.01
HPS4-206ENST00000439453 LCE3DQ9BYE3 92 aa2.51□□□□□ -2.01
HPS4-206ENST00000439453 MT1AP04731 61 aa2.5□□□□□ -2.01
HPS4-206ENST00000439453 LCE3EQ5T5B0 92 aa2.49□□□□□ -2.01
HPS4-206ENST00000439453 PRM1P04553 51 aa2.48□□□□□ -2.01
HPS4-206ENST00000439453 KRTAP4-6Q9BYQ5 205 aa2.48□□□□□ -2.01
HPS4-206ENST00000439453 MT4P47944 62 aa2.47□□□□□ -2.01
HPS4-206ENST00000439453 KRTAP6-1Q3LI64 71 aa2.43□□□□□ -2.02
HPS4-206ENST00000439453 AHNAK2Q8IVF2 5795 aa2.41□□□□□ -2.02
HPS4-206ENST00000439453 KRTAP20-2Q3LI61 65 aa2.39□□□□□ -2.03
HPS4-206ENST00000439453 KRTAP5-3Q6L8H2 238 aa2.36□□□□□ -2.03
HPS4-206ENST00000439453 GPR98Q8WXG9 6306 aa2.33□□□□□ -2.04
HPS4-206ENST00000439453 KRTAP5-10Q6L8G5 202 aa2.32□□□□□ -2.04
HPS4-206ENST00000439453 KRTAP6-2Q3LI66 62 aa2.31□□□□□ -2.04
HPS4-206ENST00000439453 KRTAP5-2Q701N4 177 aa2.3□□□□□ -2.04
HPS4-206ENST00000439453 KRTAP9-4Q9BYQ2 154 aa2.26□□□□□ -2.05
HPS4-206ENST00000439453 MT3P25713 68 aa2.24□□□□□ -2.05
HPS4-206ENST00000439453 KRTAP5-7Q6L8G8 165 aa2.19□□□□□ -2.06
HPS4-206ENST00000439453 KRTAP4-11Q9BYQ6 195 aa2.13□□□□□ -2.07
HPS4-206ENST00000439453 KRTAP5-8O75690 187 aa2.1□□□□□ -2.07
HPS4-206ENST00000439453 MUC19Q7Z5P9 8384 aa2.07□□□□□ -2.08
HPS4-206ENST00000439453 LCE1EQ5T753 118 aa2.04□□□□□ -2.08
HPS4-206ENST00000439453 KRTAP5-1Q6L8H4 278 aa2.03□□□□□ -2.08
HPS4-206ENST00000439453 LCE1FQ5T754 118 aa1.99□□□□□ -2.09
HPS4-206ENST00000439453 MUC5ACP98088 5654 aa1.98□□□□□ -2.09
HPS4-206ENST00000439453 MUC5BQ9HC84 5762 aaPredicted RBP1.95□□□□□ -2.1
HPS4-206ENST00000439453 LCE1BQ5T7P3 118 aa1.94□□□□□ -2.1
HPS4-206ENST00000439453 KRTAP9-9Q9BYP9 154 aa1.92□□□□□ -2.1
HPS4-206ENST00000439453 AHNAKQ09666 5890 aaKnown RBP1.88□□□□□ -2.11
HPS4-206ENST00000439453 KRTAP4-2Q9BYR5 136 aa1.87□□□□□ -2.11
HPS4-206ENST00000439453 LCE1CQ5T751 118 aa1.81□□□□□ -2.12
HPS4-206ENST00000439453 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.69□□□□□ -2.14
HPS4-206ENST00000439453 KRTAP5-11Q6L8G4 156 aa1.63□□□□□ -2.15
HPS4-206ENST00000439453 KRTAP4-12Q9BQ66 201 aa1.6□□□□□ -2.15
HPS4-206ENST00000439453 KRTAP21-2Q3LI59 83 aa1.58□□□□□ -2.16
HPS4-206ENST00000439453 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
HPS4-206ENST00000439453 KRTAP4-4Q9BYR3 166 aa1.54□□□□□ -2.16
HPS4-206ENST00000439453 PHGR1C9JFL3 82 aa1.41□□□□□ -2.18
HPS4-206ENST00000439453 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 62.8 ms