RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 HYDINQ4G0P3 5121 aa3.61□□□□□ -1.83
CCDC88A-207ENST00000436346 KRTAP20-1Q3LI63 56 aa3.6□□□□□ -1.83
CCDC88A-207ENST00000436346 RYR2Q92736 4967 aa3.57□□□□□ -1.84
CCDC88A-207ENST00000436346 KMT2CQ8NEZ4 4911 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-207ENST00000436346 LCE5AQ5TCM9 118 aa3.49□□□□□ -1.85
CCDC88A-207ENST00000436346 HERC2O95714 4834 aa3.49□□□□□ -1.85
CCDC88A-207ENST00000436346 SYNE2Q8WXH0 6885 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-207ENST00000436346 KRTAP4-9Q9BYQ8 210 aa3.45□□□□□ -1.86
CCDC88A-207ENST00000436346 KRTAP2-3P0C7H8 128 aa3.44□□□□□ -1.86
CCDC88A-207ENST00000436346 KRTAP2-4Q9BYR9 128 aa3.44□□□□□ -1.86
CCDC88A-207ENST00000436346 KRTAP2-1Q9BYU5 128 aa3.44□□□□□ -1.86
CCDC88A-207ENST00000436346 KRTAP9-7A8MTY7 169 aa3.42□□□□□ -1.86
CCDC88A-207ENST00000436346 MT1AP04731 61 aa3.4□□□□□ -1.87
CCDC88A-207ENST00000436346 KRTAP19-7Q3SYF9 63 aa3.36□□□□□ -1.87
CCDC88A-207ENST00000436346 BIRC6Q9NR09 4857 aa3.35□□□□□ -1.87
CCDC88A-207ENST00000436346 LCE2AQ5TA79 106 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-207ENST00000436346 KRTAP6-2Q3LI66 62 aa3.34□□□□□ -1.87
CCDC88A-207ENST00000436346 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
CCDC88A-207ENST00000436346 LCE1EQ5T753 118 aa3.31□□□□□ -1.88
CCDC88A-207ENST00000436346 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
CCDC88A-207ENST00000436346 LCE1AQ5T7P2 110 aa3.31□□□□□ -1.88
CCDC88A-207ENST00000436346 HERC1Q15751 4861 aa3.28□□□□□ -1.88
CCDC88A-207ENST00000436346 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-207ENST00000436346 KRTAP6-1Q3LI64 71 aa3.26□□□□□ -1.89
CCDC88A-207ENST00000436346 KRTAP6-3Q3LI67 103 aa3.26□□□□□ -1.89
CCDC88A-207ENST00000436346 LCE4AQ5TA78 99 aa3.23□□□□□ -1.89
CCDC88A-207ENST00000436346 ABCA13Q86UQ4 5058 aa3.18□□□□□ -1.9
CCDC88A-207ENST00000436346 KRTAP9-4Q9BYQ2 154 aa3.16□□□□□ -1.9
CCDC88A-207ENST00000436346 HMCN2Q8NDA2 5059 aa3.13□□□□□ -1.91
CCDC88A-207ENST00000436346 KRTAP2-2Q9BYT5 123 aa3.13□□□□□ -1.91
CCDC88A-207ENST00000436346 KRTAP9-6A8MVA2 160 aa3.09□□□□□ -1.91
CCDC88A-207ENST00000436346 SYNE1Q8NF91 8797 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-207ENST00000436346 EPPK1P58107 5090 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-207ENST00000436346 KRTAP9-9Q9BYP9 154 aa3.06□□□□□ -1.92
CCDC88A-207ENST00000436346 FSIP2Q5CZC0 6907 aa3.03□□□□□ -1.93
CCDC88A-207ENST00000436346 UBR4Q5T4S7 5183 aa3□□□□□ -1.93
CCDC88A-207ENST00000436346 RNF213Q63HN8 5207 aa3□□□□□ -1.93
CCDC88A-207ENST00000436346 FAT4Q6V0I7 4981 aa2.99□□□□□ -1.93
CCDC88A-207ENST00000436346 MUC2Q02817 5179 aa2.98□□□□□ -1.93
CCDC88A-207ENST00000436346 KMT2DO14686 5537 aa2.77□□□□□ -1.97
CCDC88A-207ENST00000436346 KRTAP4-6Q9BYQ5 205 aa2.76□□□□□ -1.97
CCDC88A-207ENST00000436346 OBSCNQ5VST9 7968 aa2.69□□□□□ -1.98
CCDC88A-207ENST00000436346 KRTAP4-11Q9BYQ6 195 aa2.67□□□□□ -1.98
CCDC88A-207ENST00000436346 KRTAP5-9P26371 169 aa2.67□□□□□ -1.98
CCDC88A-207ENST00000436346 KRTAP20-2Q3LI61 65 aa2.64□□□□□ -1.99
CCDC88A-207ENST00000436346 FCGBPQ9Y6R7 5405 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-207ENST00000436346 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
CCDC88A-207ENST00000436346 KRTAP4-12Q9BQ66 201 aa2.56□□□□□ -2
CCDC88A-207ENST00000436346 KRTAP4-2Q9BYR5 136 aa2.56□□□□□ -2
CCDC88A-207ENST00000436346 NEBP20929 6669 aa2.53□□□□□ -2
CCDC88A-207ENST00000436346 DSTQ03001 7570 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-207ENST00000436346 USH2AO75445 5202 aa2.51□□□□□ -2.01
CCDC88A-207ENST00000436346 KRTAP5-4Q6L8H1 288 aa2.51□□□□□ -2.01
CCDC88A-207ENST00000436346 MUC12Q9UKN1 5478 aa2.37□□□□□ -2.03
CCDC88A-207ENST00000436346 KRTAP5-5Q701N2 237 aaPredicted RBP2.35□□□□□ -2.03
CCDC88A-207ENST00000436346 SSPOA2VEC9 5147 aa2.33□□□□□ -2.04
CCDC88A-207ENST00000436346 MACF1Q9UPN3 7388 aaKnown RBP2.28□□□□□ -2.04
CCDC88A-207ENST00000436346 MDN1Q9NU22 5596 aa2.19□□□□□ -2.06
CCDC88A-207ENST00000436346 MUC19Q7Z5P9 8384 aa2.14□□□□□ -2.07
CCDC88A-207ENST00000436346 KRTAP5-3Q6L8H2 238 aa2.14□□□□□ -2.07
CCDC88A-207ENST00000436346 PHGR1C9JFL3 82 aa1.99□□□□□ -2.09
CCDC88A-207ENST00000436346 MUC5ACP98088 5654 aa1.98□□□□□ -2.09
CCDC88A-207ENST00000436346 KRTAP5-8O75690 187 aa1.97□□□□□ -2.09
CCDC88A-207ENST00000436346 GPR98Q8WXG9 6306 aa1.88□□□□□ -2.11
CCDC88A-207ENST00000436346 KRTAP5-10Q6L8G5 202 aa1.87□□□□□ -2.11
CCDC88A-207ENST00000436346 HMCN1Q96RW7 5635 aa1.84□□□□□ -2.11
CCDC88A-207ENST00000436346 MUC5BQ9HC84 5762 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-207ENST00000436346 KRTAP5-2Q701N4 177 aa1.78□□□□□ -2.13
CCDC88A-207ENST00000436346 KRTAP5-1Q6L8H4 278 aa1.67□□□□□ -2.14
CCDC88A-207ENST00000436346 KRTAP5-11Q6L8G4 156 aa1.65□□□□□ -2.15
CCDC88A-207ENST00000436346 AHNAK2Q8IVF2 5795 aa1.58□□□□□ -2.16
CCDC88A-207ENST00000436346 KRTAP21-2Q3LI59 83 aa1.56□□□□□ -2.16
CCDC88A-207ENST00000436346 AHNAKQ09666 5890 aaKnown RBP1.55□□□□□ -2.16
CCDC88A-207ENST00000436346 KRTAP21-1Q3LI58 79 aa1.51□□□□□ -2.17
CCDC88A-207ENST00000436346 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.48□□□□□ -2.17
CCDC88A-207ENST00000436346 KRTAP5-7Q6L8G8 165 aa1.36□□□□□ -2.19
CCDC88A-207ENST00000436346 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 639.4 ms