RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 KRTAP4-8Q9BYQ9 185 aa1.68□□□□□ -2.14
RIF1-203ENST00000428287 MT1EP04732 61 aa1.68□□□□□ -2.14
RIF1-203ENST00000428287 KRTAP12-4P60329 112 aa1.67□□□□□ -2.14
RIF1-203ENST00000428287 KRTAP4-7Q9BYR0 210 aa1.64□□□□□ -2.15
RIF1-203ENST00000428287 MDN1Q9NU22 5596 aa1.63□□□□□ -2.15
RIF1-203ENST00000428287 LCE2AQ5TA79 106 aaPredicted RBP1.61□□□□□ -2.15
RIF1-203ENST00000428287 MT1AP04731 61 aa1.58□□□□□ -2.16
RIF1-203ENST00000428287 MT1GP13640 62 aa1.56□□□□□ -2.16
RIF1-203ENST00000428287 KRTAP9-2Q9BYQ4 174 aa1.55□□□□□ -2.16
RIF1-203ENST00000428287 KRTAP2-2Q9BYT5 123 aa1.53□□□□□ -2.16
RIF1-203ENST00000428287 MT1MQ8N339 61 aa1.53□□□□□ -2.16
RIF1-203ENST00000428287 KRTAP19-3Q7Z4W3 81 aa1.52□□□□□ -2.17
RIF1-203ENST00000428287 LCE5AQ5TCM9 118 aa1.52□□□□□ -2.17
RIF1-203ENST00000428287 KRTAP5-5Q701N2 237 aaPredicted RBP1.52□□□□□ -2.17
RIF1-203ENST00000428287 LCE2DQ5TA82 110 aaPredicted RBP1.51□□□□□ -2.17
RIF1-203ENST00000428287 LOC100996750A0A140TA64 210 aa1.5□□□□□ -2.17
RIF1-203ENST00000428287 KRTAP19-6Q3LI70 58 aa1.5□□□□□ -2.17
RIF1-203ENST00000428287 KRTAP6-3Q3LI67 103 aa1.5□□□□□ -2.17
RIF1-203ENST00000428287 KRTAP4-3Q9BYR4 195 aa1.49□□□□□ -2.17
RIF1-203ENST00000428287 LCE3EQ5T5B0 92 aa1.47□□□□□ -2.17
RIF1-203ENST00000428287 LCE3DQ9BYE3 92 aa1.47□□□□□ -2.17
RIF1-203ENST00000428287 KRTAP9-6A0A140TA67 174 aa1.46□□□□□ -2.18
RIF1-203ENST00000428287 MUC19Q7Z5P9 8384 aa1.44□□□□□ -2.18
RIF1-203ENST00000428287 KRTAP9-7A8MTY7 169 aa1.42□□□□□ -2.18
RIF1-203ENST00000428287 PRM1P04553 51 aa1.42□□□□□ -2.18
RIF1-203ENST00000428287 KRTAP4-9Q9BYQ8 210 aa1.41□□□□□ -2.18
RIF1-203ENST00000428287 LCE3BQ5TA77 95 aa1.4□□□□□ -2.18
RIF1-203ENST00000428287 MACF1Q9UPN3 7388 aaKnown RBP1.4□□□□□ -2.19
RIF1-203ENST00000428287 KRTAP6-1Q3LI64 71 aa1.4□□□□□ -2.19
RIF1-203ENST00000428287 SPRR2FQ96RM1 72 aa1.39□□□□□ -2.19
RIF1-203ENST00000428287 SYNE2Q8WXH0 6885 aaKnown RBP1.39□□□□□ -2.19
RIF1-203ENST00000428287 LCE1AQ5T7P2 110 aa1.37□□□□□ -2.19
RIF1-203ENST00000428287 HMCN1Q96RW7 5635 aa1.36□□□□□ -2.19
RIF1-203ENST00000428287 GPR98Q8WXG9 6306 aa1.36□□□□□ -2.19
RIF1-203ENST00000428287 KRTAP6-2Q3LI66 62 aa1.35□□□□□ -2.19
RIF1-203ENST00000428287 KRTAP4-6Q9BYQ5 205 aa1.33□□□□□ -2.2
RIF1-203ENST00000428287 SPRR2AP35326 72 aa1.32□□□□□ -2.2
RIF1-203ENST00000428287 MUC5BQ9HC84 5762 aaPredicted RBP1.32□□□□□ -2.2
RIF1-203ENST00000428287 SPRR2EP22531 72 aa1.31□□□□□ -2.2
RIF1-203ENST00000428287 KRTAP5-9P26371 169 aa1.29□□□□□ -2.2
RIF1-203ENST00000428287 CRCT1Q9UGL9 99 aa1.29□□□□□ -2.2
RIF1-203ENST00000428287 KRTAP9-4Q9BYQ2 154 aa1.28□□□□□ -2.2
RIF1-203ENST00000428287 SPRR2BP35325 72 aa1.28□□□□□ -2.21
RIF1-203ENST00000428287 LCE1EQ5T753 118 aa1.26□□□□□ -2.21
RIF1-203ENST00000428287 MT3P25713 68 aa1.25□□□□□ -2.21
RIF1-203ENST00000428287 KRTAP5-2Q701N4 177 aa1.24□□□□□ -2.21
RIF1-203ENST00000428287 AHNAKQ09666 5890 aaKnown RBP1.23□□□□□ -2.21
RIF1-203ENST00000428287 SPRR2DP22532 72 aa1.23□□□□□ -2.21
RIF1-203ENST00000428287 LCE1DQ5T752 114 aa1.19□□□□□ -2.22
RIF1-203ENST00000428287 KRTAP5-4Q6L8H1 288 aa1.18□□□□□ -2.22
RIF1-203ENST00000428287 MUC5ACP98088 5654 aa1.18□□□□□ -2.22
RIF1-203ENST00000428287 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.17□□□□□ -2.22
RIF1-203ENST00000428287 KRTAP9-9Q9BYP9 154 aa1.16□□□□□ -2.22
RIF1-203ENST00000428287 KRTAP5-3Q6L8H2 238 aa1.15□□□□□ -2.23
RIF1-203ENST00000428287 KRTAP5-1Q6L8H4 278 aa1.14□□□□□ -2.23
RIF1-203ENST00000428287 KRTAP5-10Q6L8G5 202 aa1.14□□□□□ -2.23
RIF1-203ENST00000428287 AHNAK2Q8IVF2 5795 aa1.13□□□□□ -2.23
RIF1-203ENST00000428287 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.09□□□□□ -2.24
RIF1-203ENST00000428287 LCE1CQ5T751 118 aa1.04□□□□□ -2.24
RIF1-203ENST00000428287 LCE1BQ5T7P3 118 aa1.04□□□□□ -2.24
RIF1-203ENST00000428287 KRTAP4-11Q9BYQ6 195 aa1.04□□□□□ -2.24
RIF1-203ENST00000428287 NEBP20929 6669 aa1.03□□□□□ -2.24
RIF1-203ENST00000428287 KRTAP4-2Q9BYR5 136 aa1.02□□□□□ -2.25
RIF1-203ENST00000428287 KRTAP20-2Q3LI61 65 aa1.01□□□□□ -2.25
RIF1-203ENST00000428287 KRTAP21-1Q3LI58 79 aa1□□□□□ -2.25
RIF1-203ENST00000428287 KRTAP21-2Q3LI59 83 aa0.98□□□□□ -2.25
RIF1-203ENST00000428287 LCE1FQ5T754 118 aa0.98□□□□□ -2.25
RIF1-203ENST00000428287 LCE4AQ5TA78 99 aa0.97□□□□□ -2.25
RIF1-203ENST00000428287 KRTAP4-12Q9BQ66 201 aa0.96□□□□□ -2.26
RIF1-203ENST00000428287 KRTAP20-1Q3LI63 56 aa0.91□□□□□ -2.26
RIF1-203ENST00000428287 KRTAP5-7Q6L8G8 165 aa0.89□□□□□ -2.27
RIF1-203ENST00000428287 KRTAP5-8O75690 187 aa0.88□□□□□ -2.27
RIF1-203ENST00000428287 KRTAP5-11Q6L8G4 156 aa0.88□□□□□ -2.27
RIF1-203ENST00000428287 MT4P47944 62 aa0.84□□□□□ -2.27
RIF1-203ENST00000428287 KRTAP4-4Q9BYR3 166 aa0.78□□□□□ -2.28
RIF1-203ENST00000428287 PHGR1C9JFL3 82 aa0.73□□□□□ -2.29
RIF1-203ENST00000428287 MUC16Q8WXI7 14507 aa0.51□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 61 ms