RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 KRTAP2-4Q9BYR9 128 aa4.9□□□□□ -1.62
LIG1-202ENST00000427526 KRTAP2-1Q9BYU5 128 aa4.9□□□□□ -1.62
LIG1-202ENST00000427526 KRTAP9-2Q9BYQ4 174 aa4.85□□□□□ -1.63
LIG1-202ENST00000427526 MUC12Q9UKN1 5478 aa4.77□□□□□ -1.65
LIG1-202ENST00000427526 MACF1Q9UPN3 7388 aaKnown RBP4.74□□□□□ -1.65
LIG1-202ENST00000427526 CRCT1Q9UGL9 99 aa4.7□□□□□ -1.66
LIG1-202ENST00000427526 SPRR2FQ96RM1 72 aa4.7□□□□□ -1.66
LIG1-202ENST00000427526 KRTAP19-3Q7Z4W3 81 aa4.69□□□□□ -1.66
LIG1-202ENST00000427526 KRTAP4-3Q9BYR4 195 aa4.69□□□□□ -1.66
LIG1-202ENST00000427526 LOC100996750A0A140TA64 210 aa4.64□□□□□ -1.67
LIG1-202ENST00000427526 MT1GP13640 62 aa4.64□□□□□ -1.67
LIG1-202ENST00000427526 MT1MQ8N339 61 aa4.64□□□□□ -1.67
LIG1-202ENST00000427526 SYNE2Q8WXH0 6885 aaKnown RBP4.62□□□□□ -1.67
LIG1-202ENST00000427526 LCE5AQ5TCM9 118 aa4.58□□□□□ -1.68
LIG1-202ENST00000427526 DSTQ03001 7570 aaKnown RBP4.52□□□□□ -1.69
LIG1-202ENST00000427526 KRTAP5-9P26371 169 aa4.48□□□□□ -1.69
LIG1-202ENST00000427526 MDN1Q9NU22 5596 aa4.47□□□□□ -1.69
LIG1-202ENST00000427526 LCE1AQ5T7P2 110 aa4.43□□□□□ -1.7
LIG1-202ENST00000427526 SPRR2EP22531 72 aa4.37□□□□□ -1.71
LIG1-202ENST00000427526 SPRR2BP35325 72 aa4.37□□□□□ -1.71
LIG1-202ENST00000427526 SPRR2AP35326 72 aa4.37□□□□□ -1.71
LIG1-202ENST00000427526 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.34□□□□□ -1.71
LIG1-202ENST00000427526 KRTAP9-6A0A140TA67 174 aa4.32□□□□□ -1.72
LIG1-202ENST00000427526 KRTAP12-4P60329 112 aa4.3□□□□□ -1.72
LIG1-202ENST00000427526 KRTAP6-3Q3LI67 103 aa4.27□□□□□ -1.73
LIG1-202ENST00000427526 LCE3BQ5TA77 95 aa4.23□□□□□ -1.73
LIG1-202ENST00000427526 KRTAP6-1Q3LI64 71 aa4.19□□□□□ -1.74
LIG1-202ENST00000427526 SPRR2DP22532 72 aa4.19□□□□□ -1.74
LIG1-202ENST00000427526 MT1AP04731 61 aa4.18□□□□□ -1.74
LIG1-202ENST00000427526 KRTAP4-9Q9BYQ8 210 aa4.16□□□□□ -1.74
LIG1-202ENST00000427526 SYNE1Q8NF91 8797 aaKnown RBP4.15□□□□□ -1.74
LIG1-202ENST00000427526 KRTAP5-5Q701N2 237 aaPredicted RBP4.14□□□□□ -1.75
LIG1-202ENST00000427526 KRTAP2-2Q9BYT5 123 aa4.09□□□□□ -1.75
LIG1-202ENST00000427526 OBSCNQ5VST9 7968 aa4.07□□□□□ -1.76
LIG1-202ENST00000427526 LCE3DQ9BYE3 92 aa4.02□□□□□ -1.77
LIG1-202ENST00000427526 KRTAP9-7A8MTY7 169 aa4.01□□□□□ -1.77
LIG1-202ENST00000427526 LCE3EQ5T5B0 92 aa3.97□□□□□ -1.77
LIG1-202ENST00000427526 NEBP20929 6669 aa3.97□□□□□ -1.77
LIG1-202ENST00000427526 KRTAP9-4Q9BYQ2 154 aa3.91□□□□□ -1.78
LIG1-202ENST00000427526 PRM1P04553 51 aa3.9□□□□□ -1.78
LIG1-202ENST00000427526 KRTAP5-4Q6L8H1 288 aa3.8□□□□□ -1.8
LIG1-202ENST00000427526 KRTAP6-2Q3LI66 62 aa3.78□□□□□ -1.8
LIG1-202ENST00000427526 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
LIG1-202ENST00000427526 MT3P25713 68 aa3.71□□□□□ -1.81
LIG1-202ENST00000427526 KRTAP4-6Q9BYQ5 205 aa3.71□□□□□ -1.82
LIG1-202ENST00000427526 MT4P47944 62 aa3.7□□□□□ -1.82
LIG1-202ENST00000427526 LCE4AQ5TA78 99 aa3.63□□□□□ -1.83
LIG1-202ENST00000427526 LCE1DQ5T752 114 aa3.62□□□□□ -1.83
LIG1-202ENST00000427526 KRTAP20-2Q3LI61 65 aa3.58□□□□□ -1.84
LIG1-202ENST00000427526 KRTAP20-1Q3LI63 56 aa3.54□□□□□ -1.84
LIG1-202ENST00000427526 LCE1FQ5T754 118 aa3.54□□□□□ -1.84
LIG1-202ENST00000427526 HMCN1Q96RW7 5635 aa3.52□□□□□ -1.85
LIG1-202ENST00000427526 KRTAP5-2Q701N4 177 aa3.49□□□□□ -1.85
LIG1-202ENST00000427526 KRTAP5-3Q6L8H2 238 aa3.43□□□□□ -1.86
LIG1-202ENST00000427526 KRTAP9-9Q9BYP9 154 aa3.43□□□□□ -1.86
LIG1-202ENST00000427526 MUC19Q7Z5P9 8384 aa3.37□□□□□ -1.87
LIG1-202ENST00000427526 MUC5ACP98088 5654 aa3.15□□□□□ -1.91
LIG1-202ENST00000427526 LCE1BQ5T7P3 118 aa3.06□□□□□ -1.92
LIG1-202ENST00000427526 KRTAP4-11Q9BYQ6 195 aa3.05□□□□□ -1.92
LIG1-202ENST00000427526 KRTAP5-1Q6L8H4 278 aa3.02□□□□□ -1.93
LIG1-202ENST00000427526 KRTAP4-2Q9BYR5 136 aa2.97□□□□□ -1.93
LIG1-202ENST00000427526 KRTAP5-10Q6L8G5 202 aa2.96□□□□□ -1.94
LIG1-202ENST00000427526 LCE1CQ5T751 118 aa2.93□□□□□ -1.94
LIG1-202ENST00000427526 AHNAK2Q8IVF2 5795 aa2.93□□□□□ -1.94
LIG1-202ENST00000427526 KRTAP5-8O75690 187 aa2.93□□□□□ -1.94
LIG1-202ENST00000427526 KRTAP5-7Q6L8G8 165 aa2.81□□□□□ -1.96
LIG1-202ENST00000427526 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.75□□□□□ -1.97
LIG1-202ENST00000427526 KRTAP21-2Q3LI59 83 aa2.72□□□□□ -1.97
LIG1-202ENST00000427526 KRTAP4-12Q9BQ66 201 aa2.62□□□□□ -1.99
LIG1-202ENST00000427526 MUC5BQ9HC84 5762 aaPredicted RBP2.58□□□□□ -2
LIG1-202ENST00000427526 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
LIG1-202ENST00000427526 KRTAP5-11Q6L8G4 156 aa2.55□□□□□ -2
LIG1-202ENST00000427526 KRTAP21-1Q3LI58 79 aa2.52□□□□□ -2.01
LIG1-202ENST00000427526 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
LIG1-202ENST00000427526 PHGR1C9JFL3 82 aa2.21□□□□□ -2.06
LIG1-202ENST00000427526 AHNAKQ09666 5890 aaKnown RBP2.07□□□□□ -2.08
LIG1-202ENST00000427526 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 146.4 ms