RNA–Protein interactions for RNA: ENST00000426778.5

ERCC3-202, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 2

Gene ERCC3, Length 2,916 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-202ENST00000426778 LOC100996750A0A140TA64 210 aa4.87□□□□□ -1.63
ERCC3-202ENST00000426778 KRTAP2-3P0C7H8 128 aa4.85□□□□□ -1.63
ERCC3-202ENST00000426778 KRTAP2-4Q9BYR9 128 aa4.85□□□□□ -1.63
ERCC3-202ENST00000426778 KRTAP2-1Q9BYU5 128 aa4.85□□□□□ -1.63
ERCC3-202ENST00000426778 CRCT1Q9UGL9 99 aa4.82□□□□□ -1.64
ERCC3-202ENST00000426778 MT1GP13640 62 aa4.76□□□□□ -1.65
ERCC3-202ENST00000426778 LCE2DQ5TA82 110 aaPredicted RBP4.71□□□□□ -1.66
ERCC3-202ENST00000426778 KRTAP19-6Q3LI70 58 aa4.68□□□□□ -1.66
ERCC3-202ENST00000426778 SYNE1Q8NF91 8797 aaKnown RBP4.66□□□□□ -1.66
ERCC3-202ENST00000426778 MT1MQ8N339 61 aa4.6□□□□□ -1.67
ERCC3-202ENST00000426778 MACF1Q9UPN3 7388 aaKnown RBP4.57□□□□□ -1.68
ERCC3-202ENST00000426778 KRTAP19-3Q7Z4W3 81 aa4.57□□□□□ -1.68
ERCC3-202ENST00000426778 SYNE2Q8WXH0 6885 aaKnown RBP4.54□□□□□ -1.68
ERCC3-202ENST00000426778 KRTAP19-4Q3LI73 84 aa4.54□□□□□ -1.68
ERCC3-202ENST00000426778 MDN1Q9NU22 5596 aa4.52□□□□□ -1.69
ERCC3-202ENST00000426778 SPRR2FQ96RM1 72 aa4.5□□□□□ -1.69
ERCC3-202ENST00000426778 KRTAP4-9Q9BYQ8 210 aa4.45□□□□□ -1.7
ERCC3-202ENST00000426778 KRTAP12-4P60329 112 aa4.45□□□□□ -1.7
ERCC3-202ENST00000426778 LCE3BQ5TA77 95 aa4.45□□□□□ -1.7
ERCC3-202ENST00000426778 OBSCNQ5VST9 7968 aa4.43□□□□□ -1.7
ERCC3-202ENST00000426778 LCE5AQ5TCM9 118 aa4.38□□□□□ -1.71
ERCC3-202ENST00000426778 KRTAP6-1Q3LI64 71 aa4.27□□□□□ -1.73
ERCC3-202ENST00000426778 KRTAP9-2Q9BYQ4 174 aa4.09□□□□□ -1.75
ERCC3-202ENST00000426778 LCE1AQ5T7P2 110 aa4.09□□□□□ -1.75
ERCC3-202ENST00000426778 LCE3DQ9BYE3 92 aa4.08□□□□□ -1.76
ERCC3-202ENST00000426778 KRTAP9-7A8MTY7 169 aa4.07□□□□□ -1.76
ERCC3-202ENST00000426778 MT1AP04731 61 aa4.07□□□□□ -1.76
ERCC3-202ENST00000426778 SPRR2EP22531 72 aa4.03□□□□□ -1.76
ERCC3-202ENST00000426778 SPRR2BP35325 72 aa4.03□□□□□ -1.76
ERCC3-202ENST00000426778 SPRR2AP35326 72 aa4.03□□□□□ -1.76
ERCC3-202ENST00000426778 LCE3EQ5T5B0 92 aa4□□□□□ -1.77
ERCC3-202ENST00000426778 KRTAP5-5Q701N2 237 aaPredicted RBP3.98□□□□□ -1.77
ERCC3-202ENST00000426778 PRM1P04553 51 aa3.97□□□□□ -1.77
ERCC3-202ENST00000426778 KRTAP5-9P26371 169 aa3.92□□□□□ -1.78
ERCC3-202ENST00000426778 KRTAP9-4Q9BYQ2 154 aa3.84□□□□□ -1.8
ERCC3-202ENST00000426778 SPRR2DP22532 72 aa3.82□□□□□ -1.8
ERCC3-202ENST00000426778 KRTAP6-2Q3LI66 62 aa3.82□□□□□ -1.8
ERCC3-202ENST00000426778 KRTAP9-6A0A140TA67 174 aa3.74□□□□□ -1.81
ERCC3-202ENST00000426778 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.69□□□□□ -1.82
ERCC3-202ENST00000426778 MT3P25713 68 aa3.66□□□□□ -1.82
ERCC3-202ENST00000426778 KRTAP6-3Q3LI67 103 aa3.65□□□□□ -1.82
ERCC3-202ENST00000426778 KRTAP2-2Q9BYT5 123 aa3.56□□□□□ -1.84
ERCC3-202ENST00000426778 KRTAP4-6Q9BYQ5 205 aa3.53□□□□□ -1.84
ERCC3-202ENST00000426778 MT4P47944 62 aa3.52□□□□□ -1.85
ERCC3-202ENST00000426778 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
ERCC3-202ENST00000426778 NEBP20929 6669 aa3.45□□□□□ -1.86
ERCC3-202ENST00000426778 LCE1EQ5T753 118 aa3.43□□□□□ -1.86
ERCC3-202ENST00000426778 HMCN1Q96RW7 5635 aa3.4□□□□□ -1.86
ERCC3-202ENST00000426778 KRTAP5-4Q6L8H1 288 aa3.4□□□□□ -1.87
ERCC3-202ENST00000426778 MUC5ACP98088 5654 aa3.31□□□□□ -1.88
ERCC3-202ENST00000426778 KRTAP20-2Q3LI61 65 aa3.3□□□□□ -1.88
ERCC3-202ENST00000426778 LCE1DQ5T752 114 aa3.24□□□□□ -1.89
ERCC3-202ENST00000426778 KRTAP9-9Q9BYP9 154 aa3.2□□□□□ -1.9
ERCC3-202ENST00000426778 KRTAP5-2Q701N4 177 aa3.19□□□□□ -1.9
ERCC3-202ENST00000426778 LCE4AQ5TA78 99 aa3.16□□□□□ -1.9
ERCC3-202ENST00000426778 LCE1BQ5T7P3 118 aa3.15□□□□□ -1.91
ERCC3-202ENST00000426778 KRTAP5-3Q6L8H2 238 aa3.09□□□□□ -1.92
ERCC3-202ENST00000426778 KRTAP4-11Q9BYQ6 195 aa3.06□□□□□ -1.92
ERCC3-202ENST00000426778 KRTAP20-1Q3LI63 56 aa3.01□□□□□ -1.93
ERCC3-202ENST00000426778 KRTAP5-10Q6L8G5 202 aa2.95□□□□□ -1.94
ERCC3-202ENST00000426778 KRTAP4-2Q9BYR5 136 aa2.85□□□□□ -1.95
ERCC3-202ENST00000426778 MUC19Q7Z5P9 8384 aa2.82□□□□□ -1.96
ERCC3-202ENST00000426778 KRTAP5-1Q6L8H4 278 aa2.82□□□□□ -1.96
ERCC3-202ENST00000426778 LCE1CQ5T751 118 aa2.74□□□□□ -1.97
ERCC3-202ENST00000426778 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
ERCC3-202ENST00000426778 KRTAP4-12Q9BQ66 201 aa2.69□□□□□ -1.98
ERCC3-202ENST00000426778 AHNAK2Q8IVF2 5795 aa2.69□□□□□ -1.98
ERCC3-202ENST00000426778 KRTAP21-2Q3LI59 83 aa2.69□□□□□ -1.98
ERCC3-202ENST00000426778 MUC5BQ9HC84 5762 aaPredicted RBP2.66□□□□□ -1.98
ERCC3-202ENST00000426778 GPR98Q8WXG9 6306 aa2.61□□□□□ -1.99
ERCC3-202ENST00000426778 KRTAP5-8O75690 187 aa2.57□□□□□ -2
ERCC3-202ENST00000426778 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.52□□□□□ -2.01
ERCC3-202ENST00000426778 KRTAP5-7Q6L8G8 165 aa2.46□□□□□ -2.02
ERCC3-202ENST00000426778 KRTAP21-1Q3LI58 79 aa2.37□□□□□ -2.03
ERCC3-202ENST00000426778 KRTAP5-11Q6L8G4 156 aa2.33□□□□□ -2.04
ERCC3-202ENST00000426778 PHGR1C9JFL3 82 aa2.06□□□□□ -2.08
ERCC3-202ENST00000426778 AHNAKQ09666 5890 aaKnown RBP1.94□□□□□ -2.1
ERCC3-202ENST00000426778 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 13.1 ms