RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 SPRR2FQ96RM1 72 aa9.19□□□□□ -0.94
LDB1-202ENST00000425280 MUC12Q9UKN1 5478 aa9.15□□□□□ -0.95
LDB1-202ENST00000425280 KRTAP19-3Q7Z4W3 81 aa9.11□□□□□ -0.95
LDB1-202ENST00000425280 A0A0A0MQY5 61 aa9.09□□□□□ -0.95
LDB1-202ENST00000425280 SYNE2Q8WXH0 6885 aaKnown RBP9.08□□□□□ -0.96
LDB1-202ENST00000425280 MT1GP13640 62 aa9.03□□□□□ -0.96
LDB1-202ENST00000425280 KRTAP9-6A8MVA2 160 aa8.99□□□□□ -0.97
LDB1-202ENST00000425280 MT1MQ8N339 61 aa8.98□□□□□ -0.97
LDB1-202ENST00000425280 KRTAP5-9P26371 169 aa8.97□□□□□ -0.97
LDB1-202ENST00000425280 LCE5AQ5TCM9 118 aa8.93□□□□□ -0.98
LDB1-202ENST00000425280 KRTAP4-3Q9BYR4 195 aa8.89□□□□□ -0.99
LDB1-202ENST00000425280 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.84□□□□□ -0.99
LDB1-202ENST00000425280 LCE1AQ5T7P2 110 aa8.75□□□□□ -1.01
LDB1-202ENST00000425280 MDN1Q9NU22 5596 aa8.7□□□□□ -1.02
LDB1-202ENST00000425280 KRTAP6-3Q3LI67 103 aa8.68□□□□□ -1.02
LDB1-202ENST00000425280 SPRR2EP22531 72 aa8.64□□□□□ -1.03
LDB1-202ENST00000425280 SPRR2BP35325 72 aa8.64□□□□□ -1.03
LDB1-202ENST00000425280 SPRR2AP35326 72 aa8.64□□□□□ -1.03
LDB1-202ENST00000425280 LOC100996750A0A140TA64 210 aa8.63□□□□□ -1.03
LDB1-202ENST00000425280 DSTQ03001 7570 aaKnown RBP8.41□□□□□ -1.06
LDB1-202ENST00000425280 KRTAP9-7A8MTY7 169 aa8.41□□□□□ -1.06
LDB1-202ENST00000425280 KRTAP2-3P0C7H8 128 aa8.36□□□□□ -1.07
LDB1-202ENST00000425280 KRTAP2-4Q9BYR9 128 aa8.36□□□□□ -1.07
LDB1-202ENST00000425280 KRTAP2-1Q9BYU5 128 aa8.36□□□□□ -1.07
LDB1-202ENST00000425280 SPRR2DP22532 72 aa8.31□□□□□ -1.08
LDB1-202ENST00000425280 INE1O15225 51 aa8.24□□□□□ -1.09
LDB1-202ENST00000425280 NEBP20929 6669 aa8.1□□□□□ -1.11
LDB1-202ENST00000425280 KRTAP5-5Q701N2 237 aaPredicted RBP8.07□□□□□ -1.12
LDB1-202ENST00000425280 MT1AP04731 61 aa7.96□□□□□ -1.13
LDB1-202ENST00000425280 LCE3BQ5TA77 95 aa7.96□□□□□ -1.14
LDB1-202ENST00000425280 KRTAP6-1Q3LI64 71 aa7.94□□□□□ -1.14
LDB1-202ENST00000425280 SYNE1Q8NF91 8797 aaKnown RBP7.63□□□□□ -1.19
LDB1-202ENST00000425280 KRTAP5-4Q6L8H1 288 aa7.56□□□□□ -1.2
LDB1-202ENST00000425280 KRTAP9-4Q9BYQ2 154 aa7.55□□□□□ -1.2
LDB1-202ENST00000425280 KRTAP4-9Q9BYQ8 210 aa7.42□□□□□ -1.22
LDB1-202ENST00000425280 KRTAP20-1Q3LI63 56 aa7.42□□□□□ -1.22
LDB1-202ENST00000425280 KRTAP12-4P60329 112 aa7.39□□□□□ -1.23
LDB1-202ENST00000425280 KRTAP2-2Q9BYT5 123 aa7.39□□□□□ -1.23
LDB1-202ENST00000425280 LCE4AQ5TA78 99 aa7.33□□□□□ -1.24
LDB1-202ENST00000425280 KRTAP6-2Q3LI66 62 aa7.26□□□□□ -1.25
LDB1-202ENST00000425280 MT4P47944 62 aa7.24□□□□□ -1.25
LDB1-202ENST00000425280 KRTAP4-6Q9BYQ5 205 aa7.23□□□□□ -1.25
LDB1-202ENST00000425280 MT3P25713 68 aa7.19□□□□□ -1.26
LDB1-202ENST00000425280 LCE3DQ9BYE3 92 aa7.1□□□□□ -1.27
LDB1-202ENST00000425280 KRTAP20-2Q3LI61 65 aa7.08□□□□□ -1.28
LDB1-202ENST00000425280 LCE1DQ5T752 114 aa7.05□□□□□ -1.28
LDB1-202ENST00000425280 HMCN1Q96RW7 5635 aa6.98□□□□□ -1.29
LDB1-202ENST00000425280 LCE3EQ5T5B0 92 aa6.94□□□□□ -1.3
LDB1-202ENST00000425280 KRTAP5-2Q701N4 177 aa6.91□□□□□ -1.3
LDB1-202ENST00000425280 KRTAP5-3Q6L8H2 238 aa6.81□□□□□ -1.32
LDB1-202ENST00000425280 OBSCNQ5VST9 7968 aa6.56□□□□□ -1.36
LDB1-202ENST00000425280 PRM1P04553 51 aa6.2□□□□□ -1.42
LDB1-202ENST00000425280 LCE1EQ5T753 118 aa6.16□□□□□ -1.42
LDB1-202ENST00000425280 AHNAK2Q8IVF2 5795 aa6.12□□□□□ -1.43
LDB1-202ENST00000425280 KRTAP4-11Q9BYQ6 195 aa6.06□□□□□ -1.44
LDB1-202ENST00000425280 KRTAP5-1Q6L8H4 278 aa5.95□□□□□ -1.46
LDB1-202ENST00000425280 MUC5ACP98088 5654 aa5.86□□□□□ -1.47
LDB1-202ENST00000425280 LCE1BQ5T7P3 118 aa5.86□□□□□ -1.47
LDB1-202ENST00000425280 KRTAP5-8O75690 187 aa5.84□□□□□ -1.47
LDB1-202ENST00000425280 KRTAP5-10Q6L8G5 202 aa5.84□□□□□ -1.47
LDB1-202ENST00000425280 KRTAP4-2Q9BYR5 136 aa5.79□□□□□ -1.48
LDB1-202ENST00000425280 LCE1CQ5T751 118 aa5.76□□□□□ -1.49
LDB1-202ENST00000425280 KRTAP5-7Q6L8G8 165 aa5.68□□□□□ -1.5
LDB1-202ENST00000425280 GPR98Q8WXG9 6306 aa5.65□□□□□ -1.51
LDB1-202ENST00000425280 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.41□□□□□ -1.54
LDB1-202ENST00000425280 KRTAP21-2Q3LI59 83 aa5.19□□□□□ -1.58
LDB1-202ENST00000425280 KRTAP9-9Q9BYP9 154 aa5.17□□□□□ -1.58
LDB1-202ENST00000425280 KRTAP5-11Q6L8G4 156 aa5.06□□□□□ -1.6
LDB1-202ENST00000425280 MUC5BQ9HC84 5762 aaPredicted RBP5.05□□□□□ -1.6
LDB1-202ENST00000425280 KRTAP4-12Q9BQ66 201 aa4.79□□□□□ -1.64
LDB1-202ENST00000425280 KRTAP4-4Q9BYR3 166 aa4.64□□□□□ -1.67
LDB1-202ENST00000425280 AHNAKQ09666 5890 aaKnown RBP4.62□□□□□ -1.67
LDB1-202ENST00000425280 LCE1FQ5T754 118 aa4.45□□□□□ -1.7
LDB1-202ENST00000425280 PHGR1C9JFL3 82 aa4.35□□□□□ -1.71
LDB1-202ENST00000425280 MUC19Q7Z5P9 8384 aa3.89□□□□□ -1.79
LDB1-202ENST00000425280 KRTAP21-1Q3LI58 79 aa3.82□□□□□ -1.8
LDB1-202ENST00000425280 MUC16Q8WXI7 14507 aa2.86□□□□□ -1.95
Retrieved 77 of 20,778 RNA–protein pairs in 10.2 ms