RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 HMCN2Q8NDA2 5059 aa5.23□□□□□ -1.57
PHRF1-203ENST00000416188 SYNE1Q8NF91 8797 aaKnown RBP5.21□□□□□ -1.58
PHRF1-203ENST00000416188 MT1EP04732 61 aa5.17□□□□□ -1.58
PHRF1-203ENST00000416188 KRTAP9-7A8MTY7 169 aa5.15□□□□□ -1.59
PHRF1-203ENST00000416188 MT1LQ93083 61 aa5.14□□□□□ -1.59
PHRF1-203ENST00000416188 KRTAP4-7Q9BYR0 210 aa5.12□□□□□ -1.59
PHRF1-203ENST00000416188 LCE3DQ9BYE3 92 aa5.1□□□□□ -1.59
PHRF1-203ENST00000416188 MT4P47944 62 aa5.08□□□□□ -1.6
PHRF1-203ENST00000416188 MUC2Q02817 5179 aa5.02□□□□□ -1.61
PHRF1-203ENST00000416188 MT1MQ8N339 61 aa5.02□□□□□ -1.61
PHRF1-203ENST00000416188 KRTAP20-1Q3LI63 56 aa5.01□□□□□ -1.61
PHRF1-203ENST00000416188 LCE3EQ5T5B0 92 aa5.01□□□□□ -1.61
PHRF1-203ENST00000416188 SYNE2Q8WXH0 6885 aaKnown RBP5.01□□□□□ -1.61
PHRF1-203ENST00000416188 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.97□□□□□ -1.61
PHRF1-203ENST00000416188 KRTAP6-3Q3LI67 103 aa4.96□□□□□ -1.62
PHRF1-203ENST00000416188 KRTAP4-3Q9BYR4 195 aa4.85□□□□□ -1.63
PHRF1-203ENST00000416188 KRTAP2-3P0C7H8 128 aa4.8□□□□□ -1.64
PHRF1-203ENST00000416188 KRTAP2-4Q9BYR9 128 aa4.8□□□□□ -1.64
PHRF1-203ENST00000416188 LOC100996750A0A140TA64 210 aa4.8□□□□□ -1.64
PHRF1-203ENST00000416188 MT3P25713 68 aa4.8□□□□□ -1.64
PHRF1-203ENST00000416188 KRTAP19-7Q3SYF9 63 aa4.8□□□□□ -1.64
PHRF1-203ENST00000416188 LCE1AQ5T7P2 110 aa4.76□□□□□ -1.65
PHRF1-203ENST00000416188 KRTAP2-2Q9BYT5 123 aa4.64□□□□□ -1.67
PHRF1-203ENST00000416188 KRTAP2-1Q9BYU5 128 aa4.64□□□□□ -1.67
PHRF1-203ENST00000416188 PRM1P04553 51 aa4.62□□□□□ -1.67
PHRF1-203ENST00000416188 LCE1DQ5T752 114 aa4.6□□□□□ -1.67
PHRF1-203ENST00000416188 MT1AP04731 61 aa4.59□□□□□ -1.67
PHRF1-203ENST00000416188 LCE1BQ5T7P3 118 aa4.59□□□□□ -1.68
PHRF1-203ENST00000416188 OBSCNQ5VST9 7968 aa4.59□□□□□ -1.68
PHRF1-203ENST00000416188 KRTAP4-9Q9BYQ8 210 aa4.56□□□□□ -1.68
PHRF1-203ENST00000416188 USH2AO75445 5202 aa4.53□□□□□ -1.68
PHRF1-203ENST00000416188 LCE5AQ5TCM9 118 aa4.5□□□□□ -1.69
PHRF1-203ENST00000416188 LCE4AQ5TA78 99 aa4.5□□□□□ -1.69
PHRF1-203ENST00000416188 KRTAP9-6A8MVA2 160 aa4.43□□□□□ -1.7
PHRF1-203ENST00000416188 MACF1Q9UPN3 7388 aaKnown RBP4.35□□□□□ -1.71
PHRF1-203ENST00000416188 KMT2DO14686 5537 aa4.32□□□□□ -1.72
PHRF1-203ENST00000416188 KRTAP6-1Q3LI64 71 aa4.31□□□□□ -1.72
PHRF1-203ENST00000416188 NEBP20929 6669 aa4.31□□□□□ -1.72
PHRF1-203ENST00000416188 FCGBPQ9Y6R7 5405 aaPredicted RBP4.31□□□□□ -1.72
PHRF1-203ENST00000416188 KRTAP6-2Q3LI66 62 aa4.3□□□□□ -1.72
PHRF1-203ENST00000416188 DSTQ03001 7570 aaKnown RBP4.27□□□□□ -1.73
PHRF1-203ENST00000416188 KRTAP9-4Q9BYQ2 154 aa4.25□□□□□ -1.73
PHRF1-203ENST00000416188 SSPOA2VEC9 5147 aa4.24□□□□□ -1.73
PHRF1-203ENST00000416188 KRTAP5-9P26371 169 aa4.22□□□□□ -1.73
PHRF1-203ENST00000416188 MDN1Q9NU22 5596 aa4.04□□□□□ -1.76
PHRF1-203ENST00000416188 MUC12Q9UKN1 5478 aa3.95□□□□□ -1.78
PHRF1-203ENST00000416188 KRTAP9-9Q9BYP9 154 aa3.93□□□□□ -1.78
PHRF1-203ENST00000416188 LCE1CQ5T751 118 aa3.92□□□□□ -1.78
PHRF1-203ENST00000416188 LCE1EQ5T753 118 aa3.92□□□□□ -1.78
PHRF1-203ENST00000416188 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
PHRF1-203ENST00000416188 GPR98Q8WXG9 6306 aa3.91□□□□□ -1.78
PHRF1-203ENST00000416188 KRTAP4-6Q9BYQ5 205 aa3.9□□□□□ -1.78
PHRF1-203ENST00000416188 KRTAP20-2Q3LI61 65 aa3.82□□□□□ -1.8
PHRF1-203ENST00000416188 MUC19Q7Z5P9 8384 aa3.76□□□□□ -1.81
PHRF1-203ENST00000416188 KRTAP5-4Q6L8H1 288 aa3.6□□□□□ -1.83
PHRF1-203ENST00000416188 KRTAP4-11Q9BYQ6 195 aa3.49□□□□□ -1.85
PHRF1-203ENST00000416188 KRTAP5-3Q6L8H2 238 aa3.34□□□□□ -1.88
PHRF1-203ENST00000416188 KRTAP4-12Q9BQ66 201 aa3.33□□□□□ -1.88
PHRF1-203ENST00000416188 KRTAP4-2Q9BYR5 136 aa3.33□□□□□ -1.88
PHRF1-203ENST00000416188 KRTAP5-5Q701N2 237 aaPredicted RBP3.32□□□□□ -1.88
PHRF1-203ENST00000416188 KRTAP4-4Q9BYR3 166 aa3.23□□□□□ -1.89
PHRF1-203ENST00000416188 AHNAK2Q8IVF2 5795 aa3.23□□□□□ -1.89
PHRF1-203ENST00000416188 MUC5ACP98088 5654 aa3.18□□□□□ -1.9
PHRF1-203ENST00000416188 HMCN1Q96RW7 5635 aa3.12□□□□□ -1.91
PHRF1-203ENST00000416188 KRTAP5-8O75690 187 aa3.01□□□□□ -1.93
PHRF1-203ENST00000416188 KRTAP5-2Q701N4 177 aa2.82□□□□□ -1.96
PHRF1-203ENST00000416188 AHNAKQ09666 5890 aaKnown RBP2.67□□□□□ -1.98
PHRF1-203ENST00000416188 PHGR1C9JFL3 82 aa2.64□□□□□ -1.99
PHRF1-203ENST00000416188 MUC5BQ9HC84 5762 aaPredicted RBP2.58□□□□□ -2
PHRF1-203ENST00000416188 KRTAP5-10Q6L8G5 202 aa2.58□□□□□ -2
PHRF1-203ENST00000416188 KRTAP5-1Q6L8H4 278 aa2.53□□□□□ -2
PHRF1-203ENST00000416188 KRTAP5-7Q6L8G8 165 aa2.46□□□□□ -2.01
PHRF1-203ENST00000416188 KRTAP5-11Q6L8G4 156 aa2.46□□□□□ -2.02
PHRF1-203ENST00000416188 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
PHRF1-203ENST00000416188 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.14□□□□□ -2.07
PHRF1-203ENST00000416188 KRTAP21-1Q3LI58 79 aa2.05□□□□□ -2.08
PHRF1-203ENST00000416188 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 133.7 ms