RNA–Protein interactions for RNA: ENST00000412649.5

CLTCL1-201, Transcript of clathrin heavy chain like 1, humanhuman

TSL 2

Gene CLTCL1, Length 4,635 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-201ENST00000412649 SPRR2EP22531 72 aa4.41□□□□□ -1.7
CLTCL1-201ENST00000412649 SPRR2BP35325 72 aa4.41□□□□□ -1.7
CLTCL1-201ENST00000412649 SPRR2AP35326 72 aa4.41□□□□□ -1.7
CLTCL1-201ENST00000412649 LOC100996750A0A140TA64 210 aa4.36□□□□□ -1.71
CLTCL1-201ENST00000412649 LCE3DQ9BYE3 92 aa4.34□□□□□ -1.72
CLTCL1-201ENST00000412649 LCE3EQ5T5B0 92 aa4.31□□□□□ -1.72
CLTCL1-201ENST00000412649 KRTAP4-3Q9BYR4 195 aa4.29□□□□□ -1.72
CLTCL1-201ENST00000412649 SPRR2DP22532 72 aa4.28□□□□□ -1.72
CLTCL1-201ENST00000412649 KRTAP19-3Q7Z4W3 81 aa4.28□□□□□ -1.72
CLTCL1-201ENST00000412649 MT1MQ8N339 61 aa4.24□□□□□ -1.73
CLTCL1-201ENST00000412649 KRTAP9-2Q9BYQ4 174 aa4.24□□□□□ -1.73
CLTCL1-201ENST00000412649 PRM1P04553 51 aa4.21□□□□□ -1.74
CLTCL1-201ENST00000412649 SYNE1Q8NF91 8797 aaKnown RBP4.21□□□□□ -1.74
CLTCL1-201ENST00000412649 LCE2DQ5TA82 110 aaPredicted RBP4.13□□□□□ -1.75
CLTCL1-201ENST00000412649 KMT2DO14686 5537 aa4.13□□□□□ -1.75
CLTCL1-201ENST00000412649 KRTAP4-9Q9BYQ8 210 aa4.12□□□□□ -1.75
CLTCL1-201ENST00000412649 KRTAP9-6A0A140TA67 174 aa4.11□□□□□ -1.75
CLTCL1-201ENST00000412649 LCE2AQ5TA79 106 aaPredicted RBP4.09□□□□□ -1.76
CLTCL1-201ENST00000412649 KRTAP19-6Q3LI70 58 aa4.07□□□□□ -1.76
CLTCL1-201ENST00000412649 MT1AP04731 61 aa4□□□□□ -1.77
CLTCL1-201ENST00000412649 FSIP2Q5CZC0 6907 aa3.99□□□□□ -1.77
CLTCL1-201ENST00000412649 USH2AO75445 5202 aa3.96□□□□□ -1.78
CLTCL1-201ENST00000412649 KRTAP9-7A8MTY7 169 aa3.93□□□□□ -1.78
CLTCL1-201ENST00000412649 FCGBPQ9Y6R7 5405 aaPredicted RBP3.89□□□□□ -1.79
CLTCL1-201ENST00000412649 KRTAP6-1Q3LI64 71 aa3.87□□□□□ -1.79
CLTCL1-201ENST00000412649 KRTAP6-2Q3LI66 62 aa3.82□□□□□ -1.8
CLTCL1-201ENST00000412649 LCE5AQ5TCM9 118 aa3.8□□□□□ -1.8
CLTCL1-201ENST00000412649 DSTQ03001 7570 aaKnown RBP3.79□□□□□ -1.8
CLTCL1-201ENST00000412649 MT3P25713 68 aa3.78□□□□□ -1.8
CLTCL1-201ENST00000412649 KRTAP20-1Q3LI63 56 aa3.76□□□□□ -1.81
CLTCL1-201ENST00000412649 KRTAP6-3Q3LI67 103 aa3.76□□□□□ -1.81
CLTCL1-201ENST00000412649 MT4P47944 62 aa3.72□□□□□ -1.81
CLTCL1-201ENST00000412649 OBSCNQ5VST9 7968 aa3.69□□□□□ -1.82
CLTCL1-201ENST00000412649 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.69□□□□□ -1.82
CLTCL1-201ENST00000412649 LCE1AQ5T7P2 110 aa3.68□□□□□ -1.82
CLTCL1-201ENST00000412649 SYNE2Q8WXH0 6885 aaKnown RBP3.66□□□□□ -1.82
CLTCL1-201ENST00000412649 MUC12Q9UKN1 5478 aa3.64□□□□□ -1.83
CLTCL1-201ENST00000412649 KRTAP9-4Q9BYQ2 154 aa3.61□□□□□ -1.83
CLTCL1-201ENST00000412649 KRTAP2-2Q9BYT5 123 aa3.59□□□□□ -1.83
CLTCL1-201ENST00000412649 KRTAP5-5Q701N2 237 aaPredicted RBP3.59□□□□□ -1.84
CLTCL1-201ENST00000412649 SSPOA2VEC9 5147 aa3.58□□□□□ -1.84
CLTCL1-201ENST00000412649 MACF1Q9UPN3 7388 aaKnown RBP3.51□□□□□ -1.85
CLTCL1-201ENST00000412649 LCE4AQ5TA78 99 aa3.45□□□□□ -1.86
CLTCL1-201ENST00000412649 LCE1DQ5T752 114 aa3.42□□□□□ -1.86
CLTCL1-201ENST00000412649 GPR98Q8WXG9 6306 aa3.41□□□□□ -1.86
CLTCL1-201ENST00000412649 LCE1BQ5T7P3 118 aa3.4□□□□□ -1.86
CLTCL1-201ENST00000412649 KRTAP5-9P26371 169 aa3.2□□□□□ -1.9
CLTCL1-201ENST00000412649 LCE1EQ5T753 118 aa3.2□□□□□ -1.9
CLTCL1-201ENST00000412649 NEBP20929 6669 aa3.15□□□□□ -1.91
CLTCL1-201ENST00000412649 KRTAP4-11Q9BYQ6 195 aa3.12□□□□□ -1.91
CLTCL1-201ENST00000412649 MDN1Q9NU22 5596 aa3.05□□□□□ -1.92
CLTCL1-201ENST00000412649 KRTAP9-9Q9BYP9 154 aa2.98□□□□□ -1.93
CLTCL1-201ENST00000412649 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.94
CLTCL1-201ENST00000412649 LCE1CQ5T751 118 aa2.93□□□□□ -1.94
CLTCL1-201ENST00000412649 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
CLTCL1-201ENST00000412649 KRTAP4-6Q9BYQ5 205 aa2.89□□□□□ -1.95
CLTCL1-201ENST00000412649 KRTAP20-2Q3LI61 65 aa2.85□□□□□ -1.95
CLTCL1-201ENST00000412649 KRTAP5-4Q6L8H1 288 aa2.77□□□□□ -1.97
CLTCL1-201ENST00000412649 KRTAP5-10Q6L8G5 202 aa2.66□□□□□ -1.98
CLTCL1-201ENST00000412649 MUC5ACP98088 5654 aa2.65□□□□□ -1.99
CLTCL1-201ENST00000412649 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
CLTCL1-201ENST00000412649 AHNAK2Q8IVF2 5795 aa2.52□□□□□ -2.01
CLTCL1-201ENST00000412649 KRTAP5-3Q6L8H2 238 aa2.51□□□□□ -2.01
CLTCL1-201ENST00000412649 KRTAP5-2Q701N4 177 aa2.51□□□□□ -2.01
CLTCL1-201ENST00000412649 HMCN1Q96RW7 5635 aa2.4□□□□□ -2.03
CLTCL1-201ENST00000412649 KRTAP4-12Q9BQ66 201 aa2.39□□□□□ -2.03
CLTCL1-201ENST00000412649 KRTAP4-2Q9BYR5 136 aa2.39□□□□□ -2.03
CLTCL1-201ENST00000412649 KRTAP5-1Q6L8H4 278 aa2.35□□□□□ -2.03
CLTCL1-201ENST00000412649 KRTAP21-1Q3LI58 79 aa2.3□□□□□ -2.04
CLTCL1-201ENST00000412649 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
CLTCL1-201ENST00000412649 KRTAP5-8O75690 187 aa2.22□□□□□ -2.05
CLTCL1-201ENST00000412649 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.11□□□□□ -2.07
CLTCL1-201ENST00000412649 AHNAKQ09666 5890 aaKnown RBP2.05□□□□□ -2.08
CLTCL1-201ENST00000412649 KRTAP5-11Q6L8G4 156 aa2.04□□□□□ -2.08
CLTCL1-201ENST00000412649 KRTAP5-7Q6L8G8 165 aa1.98□□□□□ -2.09
CLTCL1-201ENST00000412649 PHGR1C9JFL3 82 aa1.96□□□□□ -2.1
CLTCL1-201ENST00000412649 MUC5BQ9HC84 5762 aaPredicted RBP1.93□□□□□ -2.1
CLTCL1-201ENST00000412649 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 299.2 ms