RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 MACF1Q9UPN3 7388 aaKnown RBP6.9□□□□□ -1.3
USP39-204ENST00000409766 MUC12Q9UKN1 5478 aa6.82□□□□□ -1.32
USP39-204ENST00000409766 KRTAP19-3Q7Z4W3 81 aa6.78□□□□□ -1.32
USP39-204ENST00000409766 MT1GP13640 62 aa6.74□□□□□ -1.33
USP39-204ENST00000409766 SPRR2FQ96RM1 72 aa6.72□□□□□ -1.33
USP39-204ENST00000409766 MT1MQ8N339 61 aa6.71□□□□□ -1.33
USP39-204ENST00000409766 SYNE2Q8WXH0 6885 aaKnown RBP6.71□□□□□ -1.34
USP39-204ENST00000409766 KRTAP4-3Q9BYR4 195 aa6.67□□□□□ -1.34
USP39-204ENST00000409766 KRTAP9-6A0A140TA67 174 aa6.64□□□□□ -1.35
USP39-204ENST00000409766 LCE5AQ5TCM9 118 aa6.62□□□□□ -1.35
USP39-204ENST00000409766 KRTAP5-9P26371 169 aa6.61□□□□□ -1.35
USP39-204ENST00000409766 KRTAP2-3P0C7H8 128 aa6.57□□□□□ -1.36
USP39-204ENST00000409766 KRTAP2-4Q9BYR9 128 aa6.57□□□□□ -1.36
USP39-204ENST00000409766 KRTAP2-1Q9BYU5 128 aa6.57□□□□□ -1.36
USP39-204ENST00000409766 LOC100996750A0A140TA64 210 aa6.55□□□□□ -1.36
USP39-204ENST00000409766 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.54□□□□□ -1.36
USP39-204ENST00000409766 INE1O15225 51 aa6.43□□□□□ -1.38
USP39-204ENST00000409766 LCE1AQ5T7P2 110 aa6.43□□□□□ -1.38
USP39-204ENST00000409766 KRTAP6-3Q3LI67 103 aa6.41□□□□□ -1.38
USP39-204ENST00000409766 MDN1Q9NU22 5596 aa6.4□□□□□ -1.38
USP39-204ENST00000409766 DSTQ03001 7570 aaKnown RBP6.37□□□□□ -1.39
USP39-204ENST00000409766 SPRR2EP22531 72 aa6.33□□□□□ -1.4
USP39-204ENST00000409766 SPRR2BP35325 72 aa6.33□□□□□ -1.4
USP39-204ENST00000409766 SPRR2AP35326 72 aa6.33□□□□□ -1.4
USP39-204ENST00000409766 KRTAP9-7A8MTY7 169 aa6.11□□□□□ -1.43
USP39-204ENST00000409766 SPRR2DP22532 72 aa6.09□□□□□ -1.43
USP39-204ENST00000409766 KRTAP5-5Q701N2 237 aaPredicted RBP6.02□□□□□ -1.45
USP39-204ENST00000409766 KRTAP6-1Q3LI64 71 aa5.99□□□□□ -1.45
USP39-204ENST00000409766 MT1AP04731 61 aa5.98□□□□□ -1.45
USP39-204ENST00000409766 NEBP20929 6669 aa5.97□□□□□ -1.45
USP39-204ENST00000409766 LCE3BQ5TA77 95 aa5.92□□□□□ -1.46
USP39-204ENST00000409766 SYNE1Q8NF91 8797 aaKnown RBP5.72□□□□□ -1.49
USP39-204ENST00000409766 KRTAP4-9Q9BYQ8 210 aa5.72□□□□□ -1.49
USP39-204ENST00000409766 KRTAP12-4P60329 112 aa5.68□□□□□ -1.5
USP39-204ENST00000409766 KRTAP9-4Q9BYQ2 154 aa5.67□□□□□ -1.5
USP39-204ENST00000409766 KRTAP5-4Q6L8H1 288 aa5.56□□□□□ -1.52
USP39-204ENST00000409766 LCE3DQ9BYE3 92 aa5.52□□□□□ -1.53
USP39-204ENST00000409766 KRTAP2-2Q9BYT5 123 aa5.46□□□□□ -1.54
USP39-204ENST00000409766 KRTAP6-2Q3LI66 62 aa5.43□□□□□ -1.54
USP39-204ENST00000409766 KRTAP20-1Q3LI63 56 aa5.41□□□□□ -1.54
USP39-204ENST00000409766 LCE3EQ5T5B0 92 aa5.41□□□□□ -1.54
USP39-204ENST00000409766 MT3P25713 68 aa5.39□□□□□ -1.55
USP39-204ENST00000409766 LCE4AQ5TA78 99 aa5.38□□□□□ -1.55
USP39-204ENST00000409766 MT4P47944 62 aa5.31□□□□□ -1.56
USP39-204ENST00000409766 KRTAP4-6Q9BYQ5 205 aa5.31□□□□□ -1.56
USP39-204ENST00000409766 LCE1DQ5T752 114 aa5.2□□□□□ -1.58
USP39-204ENST00000409766 KRTAP20-2Q3LI61 65 aa5.19□□□□□ -1.58
USP39-204ENST00000409766 HMCN1Q96RW7 5635 aa5.13□□□□□ -1.59
USP39-204ENST00000409766 KRTAP5-2Q701N4 177 aa5.08□□□□□ -1.6
USP39-204ENST00000409766 OBSCNQ5VST9 7968 aa5.08□□□□□ -1.6
USP39-204ENST00000409766 KRTAP5-3Q6L8H2 238 aa5.01□□□□□ -1.61
USP39-204ENST00000409766 PRM1P04553 51 aa4.96□□□□□ -1.62
USP39-204ENST00000409766 LCE1EQ5T753 118 aa4.56□□□□□ -1.68
USP39-204ENST00000409766 KRTAP4-11Q9BYQ6 195 aa4.47□□□□□ -1.69
USP39-204ENST00000409766 MUC5ACP98088 5654 aa4.47□□□□□ -1.69
USP39-204ENST00000409766 AHNAK2Q8IVF2 5795 aa4.43□□□□□ -1.7
USP39-204ENST00000409766 KRTAP5-1Q6L8H4 278 aa4.38□□□□□ -1.71
USP39-204ENST00000409766 LCE1BQ5T7P3 118 aa4.34□□□□□ -1.71
USP39-204ENST00000409766 KRTAP5-10Q6L8G5 202 aa4.33□□□□□ -1.72
USP39-204ENST00000409766 KRTAP5-8O75690 187 aa4.31□□□□□ -1.72
USP39-204ENST00000409766 LCE1CQ5T751 118 aa4.29□□□□□ -1.72
USP39-204ENST00000409766 KRTAP4-2Q9BYR5 136 aa4.29□□□□□ -1.72
USP39-204ENST00000409766 KRTAP5-7Q6L8G8 165 aa4.18□□□□□ -1.74
USP39-204ENST00000409766 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.04□□□□□ -1.76
USP39-204ENST00000409766 KRTAP21-2Q3LI59 83 aa3.91□□□□□ -1.78
USP39-204ENST00000409766 GPR98Q8WXG9 6306 aa3.89□□□□□ -1.79
USP39-204ENST00000409766 KRTAP9-9Q9BYP9 154 aa3.81□□□□□ -1.8
USP39-204ENST00000409766 KRTAP5-11Q6L8G4 156 aa3.73□□□□□ -1.81
USP39-204ENST00000409766 MUC5BQ9HC84 5762 aaPredicted RBP3.68□□□□□ -1.82
USP39-204ENST00000409766 KRTAP4-12Q9BQ66 201 aa3.5□□□□□ -1.85
USP39-204ENST00000409766 KRTAP4-4Q9BYR3 166 aa3.48□□□□□ -1.85
USP39-204ENST00000409766 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
USP39-204ENST00000409766 AHNAKQ09666 5890 aaKnown RBP3.25□□□□□ -1.89
USP39-204ENST00000409766 PHGR1C9JFL3 82 aa3.21□□□□□ -1.9
USP39-204ENST00000409766 KRTAP21-1Q3LI58 79 aa3.1□□□□□ -1.91
USP39-204ENST00000409766 MUC19Q7Z5P9 8384 aa3.05□□□□□ -1.92
USP39-204ENST00000409766 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 6.4 ms